This K23 application proposes a program of patient-oriented research training and two clinical studies which will apply novel techniques to study the mechanisms of airway hyperresponsiveness, one of the cardinal clinical features of asthma. The long-term objective is to address persistent gaps in knowledge that prevent the development of novel and specific treatments of airway hyperresponsiveness in asthma. The proposed approach will apply recently developed techniques for morphometry (design based stereology), cell isolation (laser capture microdissection), and gene expression analysis [two-step real time polymerase chain reaction (PCR)]. Application of these techniques to bronchial biopsy specimens obtained during bronchoscopy will make possible, for the first time, the study of gene expression in airway smooth muscle cells isolated from well characterized human subjects.
The specific aims of the proposal are to: 1) determine the relationship between airway smooth muscle morphometric measures and the physiologic measures of airway function, airway hyperresponsiveness [PC (20)] methacholine) and airway obstruction [(FEV (1)]; 2) determine if the gene expression profile of airway smooth muscle cells in asthma is characterized by increased expression of structural and contractile proteins, regulated by the transcription factor, serum response factor (SRF), and thought to be important in determining smooth muscle contractility in vitro; and 3) examine the relationship between corticosteroid-induced improvements in airway hyperresponsiveness in asthmatic subjects and changes in smooth muscle cell gene expression in order to identify important mediators of airway hyperresponsiveness. Because their method for analysis of gene expression will allow the analysis of many genes, they also plan to use gene expression array data and emerging in vitro data to guide them in the identification of other potential candidate genes for airway hyperresponsiveness. They propose two clinical studies: 1) a cross-sectional study comparing smooth muscle morphometry and gene expression in asthmatic subjects with mild airway hyperresponsiveness, more severe airway hyperresponsiveness, and non-asthmatic control subjects; and 2) a randomized placebo-controlled trial of inhaled corticosteroids in mild asthmatics comparing gene expression changes between groups, and determining the relationship between gene expression and PC20 within the intervention group. The candidate will complement these studies with a curriculum of advanced training in methods for the design and analysis of gene expression studies in human subjects.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Mentored Patient-Oriented Research Career Development Award (K23)
Project #
5K23RR017002-04
Application #
6879727
Study Section
National Center for Research Resources Initial Review Group (RIRG)
Program Officer
Wilde, David B
Project Start
2002-05-15
Project End
2007-04-30
Budget Start
2005-05-01
Budget End
2006-04-30
Support Year
4
Fiscal Year
2005
Total Cost
$148,770
Indirect Cost
Name
University of California San Francisco
Department
Internal Medicine/Medicine
Type
Schools of Medicine
DUNS #
094878337
City
San Francisco
State
CA
Country
United States
Zip Code
94143
Choy, David F; Modrek, Barmak; Abbas, Alexander R et al. (2011) Gene expression patterns of Th2 inflammation and intercellular communication in asthmatic airways. J Immunol 186:1861-9
Woodruff, Prescott G; Ellwanger, Almut; Solon, Margaret et al. (2009) Alveolar macrophage recruitment and activation by chronic second hand smoke exposure in mice. COPD 6:86-94
Woodruff, Prescott G; Modrek, Barmak; Choy, David F et al. (2009) T-helper type 2-driven inflammation defines major subphenotypes of asthma. Am J Respir Crit Care Med 180:388-95
Seibold, Max A; Donnelly, Samantha; Solon, Margaret et al. (2008) Chitotriosidase is the primary active chitinase in the human lung and is modulated by genotype and smoking habit. J Allergy Clin Immunol 122:944-950.e3
Woodruff, Prescott G (2008) Gene expression in asthmatic airway smooth muscle. Proc Am Thorac Soc 5:113-8
Woodruff, Prescott G; Boushey, Homer A; Dolganov, Gregory M et al. (2007) Genome-wide profiling identifies epithelial cell genes associated with asthma and with treatment response to corticosteroids. Proc Natl Acad Sci U S A 104:15858-63
Innes, Anh L; Woodruff, Prescott G; Ferrando, Ronald E et al. (2006) Epithelial mucin stores are increased in the large airways of smokers with airflow obstruction. Chest 130:1102-8
Woodruff, Prescott G; Koth, Laura L; Yang, Yee Hwa et al. (2005) A distinctive alveolar macrophage activation state induced by cigarette smoking. Am J Respir Crit Care Med 172:1383-92
Hays, S R; Ferrando, R E; Carter, R et al. (2005) Structural changes to airway smooth muscle in cystic fibrosis. Thorax 60:226-8
Woodruff, Prescott G; Dolganov, Gregory M; Ferrando, Ronald E et al. (2004) Hyperplasia of smooth muscle in mild to moderate asthma without changes in cell size or gene expression. Am J Respir Crit Care Med 169:1001-6

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