PI: TEMPERA, ITALO Project: 1K99AI099153-01 Title: Regulation of EBV Latency by Chromosome Conformation Accession Number: 3399731 ================== NOTICE: THIS ABSTRACT WAS EXTRACTED FROM APPLICATION AND HAS NOT BEEN PROOFED BY AN SRA.WHEN THERE ARE PROBLEMS WITH THE APPLICATION SCANNING PROCESS, THE EXTRACTED TEXT MAY BE INCORRECT OR INCOMPLETE. ================== The Epstein-Barr virus is a human gamma herpesvirus that infects B-lymphocytes. The EBV latent infection is associated with several human malignancies, including Burkit's lymphoma (BL) and nasopharyngeal carcinoma (NPC). During latency EBV is able to adopt at least four different gene expression programs that are referred to as latency types. These gene expression programs are regulated by alternative promoter utilization. Since the latency types are differentially immunogenic, the control of viral gene expression and promoter selection is a critical step for EBV to establish a long-term infection. Although progress has been made, the mechanism that regulates EBV gene expresion has not yet been elucidated. The analysis of chromatin surrounding the EBV latent promoters revealed that different epigenetic patterns correspond to different latency types. Moreover, we found that the cellular factor CTCF binds at several key regions of the EBV genome and regulates promoter selection and viral gene expression. We have also proved that CTCF can promote alternative chromatin loops between the viral promoters and the origin of replication of EBV, suggesting that chromatin structure can contribute to regulate EBV latency types. This proposal, combining classical biochemical methodology and chromosome conformation analysis, seeks to reveal the role of three- dimensional architecture of the EBV genome in the regulation of viral gene expression in different latency types.
The aim of this study is to use this novel approach to: 1) determine the role of CTCF/Cohesin interaction in the regulation of EBV high-order chromatin structure during latent infection;2) determine the role of the viral protein EBNA1 in the regulation of EBV genome conformation;3) determine if EBNA1 promotes inter- chromosomal DNA interactions between virus-host and host-host chromosomes;and 4) test if PARP1 inhibition deregulates the EBV chromosome architecture and viral gene expression. The goal of this project is to improve our understanding of the molecular mechanism that regulates EBV latency types. Public Health Relevance EBV is an important human pathogen that has been linked to multiple malignances and lymphoproliferative disorders. EBV can evade immune system detection by down regulating immunogenic viral proteins. Obtaining a better understanding of the molecular mechanism that regulates EBV viral gene expression will help in the development of new therapeutic strategies for the eradication of EBV latent infection. This work will facilitate the treatment of EBV-related malignancies.

Public Health Relevance

EBV is an important human pathogen that has been linked to multiple malignances and lymphoproliferative disorders. EBV can evade immune system detection by down regulating immunogenic viral proteins. Obtaining a better understanding of the molecular mechanism that regulates EBV viral gene expression will help in the development of new therapeutic strategies for the eradication of EBV latent infection. This work will facilitate the treatment of EBV-related malignancies.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Career Transition Award (K99)
Project #
1K99AI099153-01
Application #
8280521
Study Section
Microbiology and Infectious Diseases B Subcommittee (MID)
Program Officer
Beisel, Christopher E
Project Start
2012-02-01
Project End
2012-09-30
Budget Start
2012-02-01
Budget End
2012-09-30
Support Year
1
Fiscal Year
2012
Total Cost
$108,616
Indirect Cost
$8,046
Name
Temple University
Department
Microbiology/Immun/Virology
Type
Schools of Medicine
DUNS #
057123192
City
Philadelphia
State
PA
Country
United States
Zip Code
19122
Lu, Fang; Tempera, Italo; Lee, Hyunna T et al. (2014) EBNA1 binding and epigenetic regulation of gastrokine tumor suppressor genes in gastric carcinoma cells. Virol J 11:12
Plasschaert, Robert N; Vigneau, Sebastien; Tempera, Italo et al. (2014) CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation. Nucleic Acids Res 42:774-89
Arvey, Aaron; Tempera, Italo; Lieberman, Paul M (2013) Interpreting the Epstein-Barr Virus (EBV) epigenome using high-throughput data. Viruses 5:1042-54