This project responds to timely methodology needs and opportunities in biomarker evaluations for cancer risk prediction, diagnosis, early detection, and prognosis In the Early Detection Research Network (EDRN). Nevertheless, our work will have implications more broadly for studies of medical tests.
The first aim proposes the development of ROC analysis that allows combination of datasets from multiple studies, populations or platforms including determining if ROC performance is common across datasets;providing efficient estimation of the common ROC performance;and quantifying factors either within or across datasets that affect ROC performance when performance is not common. The proposed methodology provides a unified framework for risk prediction modeling and ROC regression methdologies that have been disjoint and potentially inconsistent.
A second aim i s concerned with group sequential design methods development with the goal of preserving high quality biospecimens in biomarker validation studies, including developing methods for estimating the performance of single markers or marker combinations that accommodate the potential for early study termination;and investigating optimization of design parameters such as timing of interim analyses and criteria for early termination.
A final aim responds to methodology needs in study designs for prognostic biomarker evaluations, including efficient ways of selecting for ascertainment of data and specimens;estimating a variety of biomarker performance metrics from these designs;and comparing them with existing designs and estimation approaches. The general approach involves the specification of pertinent statistical methods and the use of both theoretical probablitistic methods, and computer simulations that are informed by application to data from substantive research contexts in which the four participating biostatistical investigators are engaged.

Public Health Relevance

This project proposes to develop statistical methods to allow combining data sources to identify and confirm new medical tests;to allow early termination of nonperforming biomarkers yet rigorous and efficient estimation of new medical test performance;and to enable rigorous and efficient study designs for disease prognosis studies when ascertainment of clinical and biomarker data from all patients in existing biorepositories is not feasible.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Program Projects (P01)
Project #
5P01CA053996-36
Application #
8534551
Study Section
Special Emphasis Panel (ZCA1-GRB-S)
Project Start
Project End
Budget Start
2013-07-01
Budget End
2014-06-30
Support Year
36
Fiscal Year
2013
Total Cost
$162,960
Indirect Cost
$61,653
Name
Fred Hutchinson Cancer Research Center
Department
Type
DUNS #
078200995
City
Seattle
State
WA
Country
United States
Zip Code
98109
Prentice, Ross L; Zhao, Shanshan (2018) Nonparametric estimation of the multivariate survivor function: the multivariate Kaplan-Meier estimator. Lifetime Data Anal 24:3-27
Howard, Barbara V; Aragaki, Aaron K; Tinker, Lesley F et al. (2018) A Low-Fat Dietary Pattern and Diabetes: A Secondary Analysis From the Women's Health Initiative Dietary Modification Trial. Diabetes Care 41:680-687
Huang, Yijian; Wang, Ching-Yun (2018) Cox regression with dependent error in covariates. Biometrics 74:118-126
Su, Yu-Ru; Di, Chongzhi; Bien, Stephanie et al. (2018) A Mixed-Effects Model for Powerful Association Tests in Integrative Functional Genomics. Am J Hum Genet 102:904-919
Liu, Dandan; Cai, Tianxi; Lok, Anna et al. (2018) Nonparametric Maximum Likelihood Estimators of Time-Dependent Accuracy Measures for Survival Outcome Under Two-Stage Sampling Designs. J Am Stat Assoc 113:882-892
Yu, Hsiang; Cheng, Yu-Jen; Wang, Ching-Yun (2018) Methods for multivariate recurrent event data with measurement error and informative censoring. Biometrics 74:966-976
Monaco, John V; Gorfine, Malka; Hsu, Li (2018) General Semiparametric Shared Frailty Model: Estimation and Simulation with frailtySurv. J Stat Softw 86:
Dai, James Y; Wang, Xiaoyu; Buas, Matthew F et al. (2018) Whole-genome sequencing of esophageal adenocarcinoma in Chinese patients reveals distinct mutational signatures and genomic alterations. Commun Biol 1:174
Dai, James Y; Peters, Ulrike; Wang, Xiaoyu et al. (2018) Diagnostics for Pleiotropy in Mendelian Randomization Studies: Global and Individual Tests for Direct Effects. Am J Epidemiol 187:2672-2680
Dai, James Y; Liang, C Jason; LeBlanc, Michael et al. (2018) Case-only approach to identifying markers predicting treatment effects on the relative risk scale. Biometrics 74:753-763

Showing the most recent 10 out of 319 publications