In recent years, advances in multi-dimensional NMR spectroscopy have made possible the determination of the three-dimensional structures of proteins (of sizes less than 25 kD) and peptides in solution. In addition, side- chain and backbone dynamics measurements allow the determination of site- specific information on regions of flexibility. Internal motions of proteins, such as rotations of individual amino acid residues as well as concerted segmental motions of groups of residues, occur on widely different time scales and result from random thermal motions as well as interactions with specific ligands and or proteins. These fluctuations are recognized as being very important in biological functions, including enzyme catalysis, allosterism, protein-protein interactions and ligand binding. Current knowledge of the details of these motions is fragmentary. The Core Director has used these methods to study the folding and dynamics of sperm whale myoglobin. In addition, the Director has employed heteronuclear filtering methods to probe protein-ligand binding interactions. She will continue to use these methods to investigate the role of protein dynamics in protein systems of biological importance. We have assembled a core facility which will give access to this technology to all the Investigators of the Program Project. 1) to provide technical expertise in protein NMR measurements. 2) to provide aid in the design of new experiments to target specific questions of biological importance 3) to provide training to investigators in the use of NMR spectroscopy. The core facility is organized to offer maximum collaborative potential for all investigators, and to maximize the use of the latest state-of-the- art techniques to address problems of biological importance.

Project Start
1999-12-01
Project End
2001-06-30
Budget Start
1998-10-01
Budget End
1999-09-30
Support Year
2
Fiscal Year
2000
Total Cost
$141,015
Indirect Cost
Name
University of California San Diego
Department
Type
DUNS #
077758407
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Flippo, Kyle H; Gnanasekaran, Aswini; Perkins, Guy A et al. (2018) AKAP1 Protects from Cerebral Ischemic Stroke by Inhibiting Drp1-Dependent Mitochondrial Fission. J Neurosci 38:8233-8242
Sengupta, Soham; Nechushtai, Rachel; Jennings, Patricia A et al. (2018) Phylogenetic analysis of the CDGSH iron-sulfur binding domain reveals its ancient origin. Sci Rep 8:4840
Haushalter, Kristofer J; Casteel, Darren E; Raffeiner, Andrea et al. (2018) Phosphorylation of protein kinase A (PKA) regulatory subunit RI? by protein kinase G (PKG) primes PKA for catalytic activity in cells. J Biol Chem 293:4411-4421
Sastri, Mira; Darshi, Manjula; Mackey, Mason et al. (2017) Sub-mitochondrial localization of the genetic-tagged mitochondrial intermembrane space-bridging components Mic19, Mic60 and Sam50. J Cell Sci 130:3248-3260
Smith, F Donelson; Esseltine, Jessica L; Nygren, Patrick J et al. (2017) Local protein kinase A action proceeds through intact holoenzymes. Science 356:1288-1293
Parker, Seth J; Svensson, Robert U; Divakaruni, Ajit S et al. (2017) LKB1 promotes metabolic flexibility in response to energy stress. Metab Eng 43:208-217
Nystoriak, Matthew A; Nieves-CintrĂ³n, Madeline; Patriarchi, Tommaso et al. (2017) Ser1928 phosphorylation by PKA stimulates the L-type Ca2+ channel CaV1.2 and vasoconstriction during acute hyperglycemia and diabetes. Sci Signal 10:
Ilouz, Ronit; Lev-Ram, Varda; Bushong, Eric A et al. (2017) Isoform-specific subcellular localization and function of protein kinase A identified by mosaic imaging of mouse brain. Elife 6:
Nygren, Patrick J; Mehta, Sohum; Schweppe, Devin K et al. (2017) Intrinsic disorder within AKAP79 fine-tunes anchored phosphatase activity toward substrates and drug sensitivity. Elife 6:
Aggarwal-Howarth, Stacey; Scott, John D (2017) Pseudoscaffolds and anchoring proteins: the difference is in the details. Biochem Soc Trans 45:371-379

Showing the most recent 10 out of 216 publications