The metabolomics core laboratory at the Duke Stedman Center deploys both targeted and non-targeted mass spectrometry (MS)-based metabolic profiling to provide a rare combination of broad coverage and analytical precision. The Duke team has been a leader in applying targeted MS-based metabolic profiling for understanding of disease and biological mechanisms. The role of the core in the current application will be to perform both targeted and non-targeted metabolomics assays on samples generated by Dr. Gordon in Project 1, and Drs. Heath and Klein in Project 2;in both instances this work continues previously established and productive collaborations between our groups. In the context of Project 1, Core A will measure metabolites produced by microbial communities taken from obese and lean twin pairs and transplanted into germ-free mice, and will also provide metabolomic profiles of serum, urine and tissues of the host animals. In the context of Project 2, Core A will provide metabolomic profiles of twin pairs with discordance for obesity that are further sub-divided into metabolically well and unwell subgroups. Obtaining metabolic profiles of the human subjects in collaboration with Project 2 provides a unique opportunity to investigate the impact of gut microbiota from those subjects on metabolism when transplanted into mice via Project 1. We hypothesize that disease-related metabolic signatures will be transmitted to germ-free mice by transplantation of microbial communities from obese and metabolically unhealthy subjects. Metabolic profiles of serum, urine and tissues will include targeted MS/MS and GC/MS-based assays of approximately 220 metabolites across 8 classes or """"""""modules"""""""" of analytes that represent byproducts of core metabolic pathways. These analyses will be supplemented by non-targeted GC/MS-based analyses of a broader array of metabolites, including some unique to microbial metabolic pathways.

Public Health Relevance

Studies by Core A will support the efforts of Projects 1 and 2 to understand the impact of gut microorganisms on host serum, urine and tissue metabolic profiles of the host. Defining the impact of the microbiota from obese, metabolically unhealthy versus lean healthy individuals on host metabolism has the potential to define new therapeutic strategies for intervention in obesity and related metabolic diseases and conditions.

National Institute of Health (NIH)
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Research Program Projects (P01)
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Special Emphasis Panel (ZDK1)
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Washington University
Saint Louis
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Faith, Jeremiah J; Colombel, Jean-Frédéric; Gordon, Jeffrey I (2015) Identifying strains that contribute to complex diseases through the study of microbial inheritance. Proc Natl Acad Sci U S A 112:633-40
Rosenbaum, Michael; Knight, Rob; Leibel, Rudolph L (2015) The gut microbiota in human energy homeostasis and obesity. Trends Endocrinol Metab 26:493-501
Heath, Andrew C (2015) Metagenomics: a new frontier for translational research and personalized therapeutics in psychiatry? Biol Psychiatry 77:600-1
Peterson, Daniel A; Planer, Joseph D; Guruge, Janaki L et al. (2015) Characterizing the interactions between a naturally primed immunoglobulin A and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice. J Biol Chem 290:12630-49
Subramanian, Sathish; Blanton, Laura V; Frese, Steven A et al. (2015) Cultivating healthy growth and nutrition through the gut microbiota. Cell 161:36-48
Dey, Neelendu; Wagner, Vitas E; Blanton, Laura V et al. (2015) Regulators of gut motility revealed by a gnotobiotic model of diet-microbiome interactions related to travel. Cell 163:95-107
Luo, Chengwei; Knight, Rob; Siljander, Heli et al. (2015) ConStrains identifies microbial strains in metagenomic datasets. Nat Biotechnol 33:1045-52
Ussar, Siegfried; Griffin, Nicholas W; Bezy, Olivier et al. (2015) Interactions between Gut Microbiota, Host Genetics and Diet Modulate the Predisposition to Obesity and Metabolic Syndrome. Cell Metab 22:516-30
Duncan, Alexis E; Sartor, Carolyn E; Jonson-Reid, Melissa et al. (2015) Associations between body mass index, post-traumatic stress disorder, and child maltreatment in young women. Child Abuse Negl 45:154-62
Walters, William A; Xu, Zech; Knight, Rob (2014) Meta-analyses of human gut microbes associated with obesity and IBD. FEBS Lett 588:4223-33

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