The QUANTITATIVE MOLECULAR ANALYSIS CORE will support novel, innovate state-of-the-art fluorescence detection and kinetic PCR technology using the ABI 7700 Sequence Detector machine to sensitively, specifically and reproducibly quantify target DNA and RNA sequences in blood and tissue with high through put. Thus, making it possible for them to readily quantify a range of genes and gene transcripts applicable to their particular area of research. Additionally, the core will provide for the construction of stringency matched primers for target sequence amplification and for the construction of sequence-specific fluorescence- linked oligonucleotides for target sequence detection. The quantitative molecular analysis core will be co-directed by Drs. Nabel and Wolinsky of the University of Michigan and Northwestern University, respectively. Dr. Nabel and Dr. Betty Wu, his staff member at the University of Michigan, and Dr. Wolinsky and Dr. Clark Brown and Ms. Patricia Otto, his staff at Northwestern University, will be responsible for overseeing, in detail, the specimen handling, DNA and RNA processing and oligonucleotide primer and probe sequence design and construction that conforms to the strict stringency requirements of the assay. The goal of the DNA sequencing core is to: (1) provide a core laboratory of high through put, reproducible quantitative DNA and RNA analysis; (2) provide for the construction of stringency matched primers for target sequence amplification; and (3) provide for the construction of sequence-specific fluorescence-linked oligonucleotides for target sequence detection. The quantitative molecular analysis core facilitates interactions among researchers, allows researchers to readily access automated quantitative molecular analysis, lowers the cost of this technology to individual researchers, and facilitates the undertaking of new projects.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Center Core Grants (P30)
Project #
5P30CA079458-04
Application #
6503497
Study Section
Project Start
2001-09-24
Project End
2003-08-31
Budget Start
Budget End
Support Year
4
Fiscal Year
2001
Total Cost
Indirect Cost
Name
Northwestern University at Chicago
Department
Type
DUNS #
005436803
City
Chicago
State
IL
Country
United States
Zip Code
60611
Estes, Jacob D; Haase, Ashley T; Schacker, Timothy W (2008) The role of collagen deposition in depleting CD4+ T cells and limiting reconstitution in HIV-1 and SIV infections through damage to the secondary lymphoid organ niche. Semin Immunol 20:181-6
Estes, Jacob; Baker, Jason V; Brenchley, Jason M et al. (2008) Collagen deposition limits immune reconstitution in the gut. J Infect Dis 198:456-64
Reilly, Cavan; Raghavan, Arvind; Bohjanen, Paul (2006) Global assessment of cross-hybridization for oligonucleotide arrays. J Biomol Tech 17:163-72
Schacker, Timothy W; Brenchley, Jason M; Beilman, Gregory J et al. (2006) Lymphatic tissue fibrosis is associated with reduced numbers of naive CD4+ T cells in human immunodeficiency virus type 1 infection. Clin Vaccine Immunol 13:556-60
Reilly, Cavan (2005) A nonparametric approach to the analysis of longitudinal data via a set of level crossing problems with application to the analysis of microarray time course experiments. Biostatistics 6:271-8
Schleyer, Titus K L; Teasley, Stephanie D; Bhatnagar, Rishi (2005) Comparative case study of two biomedical research collaboratories. J Med Internet Res 7:e53
Li, Qingsheng; Schacker, Timothy; Carlis, John et al. (2004) Functional genomic analysis of the response of HIV-1-infected lymphatic tissue to antiretroviral therapy. J Infect Dis 189:572-82
Krathwohl, Mitchell D; Kaiser, Jodi L (2004) HIV-1 promotes quiescence in human neural progenitor cells. J Infect Dis 190:216-26
Ruth, Jeffrey H; Shahrara, Shiva; Park, Christy C et al. (2003) Role of macrophage inflammatory protein-3alpha and its ligand CCR6 in rheumatoid arthritis. Lab Invest 83:579-88
Pope, Melissa; Haase, Ashley T (2003) Transmission, acute HIV-1 infection and the quest for strategies to prevent infection. Nat Med 9:847-52

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