Genomic technologies have broadly impacted vision science and have a critical role in most of the research programs carried out at Mass Eye and Ear. The Genomics core provides access to state-of-the-art genomic resources at low cost. Direct access to the Genomics core resources and expertise makes it possible for investigators to efficiently obtain high-quality data and eliminates the long queues for services such as next-generation sequencing frequently experienced at off-site centers. Importantly, the expert Genomics core personnel can help investigators plan appropriate experiments and assist with analyses (including troubleshooting)- services that would not be readily available elsewhere. The efficient timeline for data acquisition increases the overall productivity of the core investigators as well as improves the quality of the research. Genomic data is an important feature of most of the MEEI research programs and is especially important for the translational studies. The Genomics core personnel are experts in the genetics and genomics of eye disease, creating opportunities for collaboration among investigators using this resource. Overall direct access to Genomics core personnel and resources greatly enhances the quality of the research and ultimate accomplishments of the core investigators. The Genomics core is directed by Dr. Eric Pierce, an expert in the genetics and genomics of inherited ocular disease. Services provided by the Genomics core includes: Sanger sequencing, whole exome sequencing, selective exon capture and next generation sequencing (NGS) for ocular disease genes (RetNeT, glaucoma, optic neuropathy, mitochondrial DNA), genome-wide genotyping (both common and rare variation), copy number variation (CNV) using array CGH (comparative genomic hybridization), high-density genotypes and MLPA (multiplex ligation-dependent probe amplification), RNA sequencing (RNA-seq) for transcriptome analyses, and genomic bioinformatics (next-generation sequencing and transcriptome pipelines, genotype data cleaning, CNV analyses).

Public Health Relevance

Genetic and genomic data is an important feature of many different types of investigations carried out by MEEI vision scientists. The Genomics core resources will make it possible for core investigators to obtain high quality data that will enhance their overall research programs. The Genomics core resources will stimulate collaborations and facilitate translational research, a major goal of the overall Core.

Agency
National Institute of Health (NIH)
Type
Center Core Grants (P30)
Project #
2P30EY014104-11
Application #
8909242
Study Section
Special Emphasis Panel (ZEY1)
Program Officer
Liberman, Ellen S
Project Start
Project End
Budget Start
Budget End
Support Year
11
Fiscal Year
2014
Total Cost
Indirect Cost
Name
Massachusetts Eye and Ear Infirmary
Department
Type
DUNS #
City
Boston
State
MA
Country
United States
Zip Code
02114
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