The aim of this research proposal is to generate pilot-scale chemical diversity libraries for their use in high throughput biological screening by the Molecular Libraries Screening Center Network (MLSCN). Our effort will be focused on development of diversity-oriented syntheses of bisheterocyclic libraries characterized by the presence of two heterocyclic moieties connected by a spacer. Both heterocyclic rings will be assembled in a combinatorial fashion during the synthesis. Individual library members will contain a combination of different heterocyclic rings thus providing access to classes of compounds so far not systematically studied, but with a substantial potential to become drugs. Proposed libraries are designed with subsequent optimization of initial hits in mind; synthetic routes allow introduction of a large selection of diverse building blocks for the synthesis of optimization libraries. Libraries will be prepared in combinatorial fashion on solid phase and library synthesis and logistic will not be tailored to any specific instrumentation; the synthesis will be compatible with any synthetic laboratory without requirement for any specific solid-phase instrumentation. ? ? Our long term objective is a systematic study of bisheterocyclic compounds using diversity-oriented combinatorial solid-phase synthesis and evaluating their biological activities in a broad range of screens. ? ? There are three specific aims of this project: ? ? 1. Library design and chemistry development: to design diverse bisheterocyclic library for subsequent combinatorial synthesis, to develop robust methodology for combinatorial solid-phase synthesis of selected compounds, and to assess the scope and limitation of the developed methodology for a diverse set of building blocks. ? ? 2. Library synthesis: to perform solid-phase combinatorial synthesis of a library containing 1000 compounds, using the directed split-and-pool methodology, followed by cleavage, isolation, purification, and full characterization of products. ? ? 3. Library submission: to format and organize compounds in a ready-to-test format according to the recommendation of the NIH Small-Molecule Repository and to prepare compound and reaction databases. ? ? ?

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Biotechnology Resource Grants (P41)
Project #
5P41GM079576-03
Application #
7484197
Study Section
Special Emphasis Panel (ZGM1-PPBC-3 (PL))
Program Officer
Schwab, John M
Project Start
2006-09-15
Project End
2010-08-31
Budget Start
2008-09-01
Budget End
2010-08-31
Support Year
3
Fiscal Year
2008
Total Cost
$178,604
Indirect Cost
Name
University of Notre Dame
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
824910376
City
Notre Dame
State
IN
Country
United States
Zip Code
46556
Krupkova, Sona; Slough, Greg A; Krchnak, Viktor (2010) Synthesis of quinazolines from N-(2-nitrophenylsulfonyl)iminodiacetate and alpha-(2-nitrophenylsulfonyl)amino ketones via 2H-indazole 1-oxides. J Org Chem 75:4562-6
Koci, Jan; Krchnak, Viktor (2010) Solid-phase synthesis and chemical properties of 2-(2-amino/hydroxyethyl)-1-aryl-3,4-dihydropyrazino[1, 2-b]indazol-2-iums. J Comb Chem 12:168-75
Koci, Jan; Oliver, Allen G; Krchnak, Viktor (2010) Unprecedented rearrangement of 2-(2-aminoethyl)-1-aryl-3,4-dihydropyrazino[1,2-b]indazole-2-ium 6-oxides to 2,3-dihydro-1H-imidazo[1,2-b]indazoles. J Org Chem 75:502-5
Kocí, Jan; Pudelová, Nad?zda; Krchnák, Viktor (2009) Polymer-supported alpha-acylamino ketones: preparation and application in syntheses of 1,2,4-trisubstituted-1H-imidazoles. J Comb Chem 11:397-402
Pudelová, Nadezda; Krchnák, Viktor (2009) Multiplicity of diverse heterocycles from polymer-supported alpha-acylamino ketones. J Comb Chem 11:851-9
Pudelová, Nadezda; Krchnák, Viktor (2009) Efficient traceless solid-phase synthesis of 3,4-dihydropyrazino[1,2-b]indazoles and their 6-oxides. J Comb Chem 11:370-4
Bouillon, Isabelle; Soural, Miroslav; Miller, Marvin J et al. (2009) Resins with identical specifications are not identical. Identifying a useful solid-phase resin. J Comb Chem 11:213-5
Bouillon, Isabelle; Soural, Miroslav; Krchnak, Viktor (2008) Resin capsules: permeable containers for parallel/combinatorial solid-phase organic synthesis. J Comb Chem 10:714-20
Soural, Miroslav; Bouillon, Isabelle; Krchnak, Viktor (2008) Combinatorial libraries of bis-heterocyclic compounds with skeletal diversity. J Comb Chem 10:923-33
Bouillon, Isabelle; Zajicek, Jaroslav; Pudelova, Nadyyzda et al. (2008) Remarkably efficient synthesis of 2H-indazole 1-oxides and 2H-indazoles via tandem carbon-carbon followed by nitrogen-nitrogen bond formation. J Org Chem 73:9027-32

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