Research Area I: Assembly of Host-Microbe Systems. We will advance the fundamental understanding of the processes that govern the assembly of host-microbe systems by analyzing how ecological pressures such as bacterial competition and host innate immunity shape community phylogenetic structures.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Specialized Center (P50)
Project #
5P50GM098911-03
Application #
8727609
Study Section
Special Emphasis Panel (ZGM1)
Project Start
Project End
Budget Start
2014-09-01
Budget End
2015-08-31
Support Year
3
Fiscal Year
2014
Total Cost
Indirect Cost
Name
University of Oregon
Department
Type
DUNS #
City
Eugene
State
OR
Country
United States
Zip Code
97403
Burns, Adam R; Stephens, W Zac; Stagaman, Keaton et al. (2016) Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development. ISME J 10:655-64
Mason, Timothy; Snell, Kathy; Mittge, Erika et al. (2016) Strategies to Mitigate a Mycobacterium marinum Outbreak in a Zebrafish Research Facility. Zebrafish :
Wiles, Travis J; Jemielita, Matthew; Baker, Ryan P et al. (2016) Host Gut Motility Promotes Competitive Exclusion within a Model Intestinal Microbiota. PLoS Biol 14:e1002517
Hill, Jennifer Hampton; Franzosa, Eric A; Huttenhower, Curtis et al. (2016) A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development. Elife 5:
Milligan-Myhre, Kathryn; Small, Clayton M; Mittge, Erika K et al. (2016) Innate immune responses to gut microbiota differ between oceanic and freshwater threespine stickleback populations. Dis Model Mech 9:187-98
Zac Stephens, W; Burns, Adam R; Stagaman, Keaton et al. (2016) The composition of the zebrafish intestinal microbial community varies across development. ISME J 10:644-54
Preston, Jessica L; Royall, Ariel E; Randel, Melissa A et al. (2016) High-specificity detection of rare alleles with Paired-End Low Error Sequencing (PELE-Seq). BMC Genomics 17:464
Klein, Ann M; Bohannan, Brendan J M; Jaffe, Daniel A et al. (2016) Molecular Evidence for Metabolically Active Bacteria in the Atmosphere. Front Microbiol 7:772
Hammers, Matthew D; Taormina, Michael J; Cerda, Matthew M et al. (2015) A Bright Fluorescent Probe for H2S Enables Analyte-Responsive, 3D Imaging in Live Zebrafish Using Light Sheet Fluorescence Microscopy. J Am Chem Soc 137:10216-23
Stagaman, Keaton; Martinez, Emily S; Guillemin, Karen (2015) Immigrants in immunology: the benefits of lax borders. Trends Immunol 36:286-9

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