The proposed work is to learn about basic principles of the interaction of cell surface adhesion receptors with counter receptors, ligands and viral proteins. It will also address aspects of membrane anchoring and signalling. He will study by NMR the solution structures of extra cellular domains of immune-cell surface protein receptors, their co-receptors and receptor/co-receptor complexes. This research will lead to an understanding of principles of receptor function, protein-protein recognition, receptor specificity and cell adhesion. It will include solving carbohydrate structures in intact glycoprotein domains. The work will initially focus on the structure refinement of the glycosylated adhesion domain of human CD2, a 13 kDa protein with a single N-linked high-mannose glycan. This glycan or part of it is crucial for the adhesion function of hCD2. Relaxation studies will map the relative mobility of different polypeptide and glycan parts. Next the interaction with the co-receptor CD58 will be characterized. For this purpose, the adhesion domain of CD58 will be expressed, and the structure of the adhesion domain will be solved by NMR. Following this, the structure of the receptor co-receptor complex (ca. 25 kDa) will be studied. As a related theme, the solution structure of the N-terminal two-domain 184-residue fragment of human CD4 will be solved to obtain a basis for binding studies with peptides from HIV gp 120 and major histocompatibility complex molecules. This will include studies of the internal mobility using 15N and relaxation experiments in order to explore whether increased or reduced mobility is relevant for the interaction with other proteins. This work will be complemented by solving the solution structure of a single-chain Fv fragment of a Dl0 T-cell receptor (TCR) of antigens. Finally, he will study the conformations of the small membrane-crossing segments of CD2, CD4 and the T-cell receptor using NMR experiments with isotope labelled peptides in perdeuterated micelles.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
5R01AI037581-04
Application #
2886991
Study Section
Biophysical Chemistry Study Section (BBCB)
Program Officer
Quill, Helen R
Project Start
1996-07-15
Project End
2001-06-30
Budget Start
1999-07-01
Budget End
2000-06-30
Support Year
4
Fiscal Year
1999
Total Cost
Indirect Cost
Name
Harvard University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
082359691
City
Boston
State
MA
Country
United States
Zip Code
02115
Brazin, Kristine N; Mallis, Robert J; Boeszoermenyi, Andras et al. (2018) The T Cell Antigen Receptor ? Transmembrane Domain Coordinates Triggering through Regulation of Bilayer Immersion and CD3 Subunit Associations. Immunity 49:829-841.e6
Mallis, Robert J; Arthanari, Haribabu; Lang, Matthew J et al. (2018) NMR-directed design of pre-TCR? and pMHC molecules implies a distinct geometry for pre-TCR relative to ??TCR recognition of pMHC. J Biol Chem 293:754-766
Zhao, Zhao; Zhang, Meng; Hogle, James M et al. (2018) DNA-Corralled Nanodiscs for the Structural and Functional Characterization of Membrane Proteins and Viral Entry. J Am Chem Soc 140:10639-10643
Robson, Scott A; Takeuchi, Koh; Boeszoermenyi, Andras et al. (2018) Mixed pyruvate labeling enables backbone resonance assignment of large proteins using a single experiment. Nat Commun 9:356
Hagn, Franz; Nasr, Mahmoud L; Wagner, Gerhard (2018) Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR. Nat Protoc 13:79-98
Nasr, Mahmoud L; Wagner, Gerhard (2018) Covalently circularized nanodiscs; challenges and applications. Curr Opin Struct Biol 51:129-134
Coote, Paul W; Robson, Scott A; Dubey, Abhinav et al. (2018) Optimal control theory enables homonuclear decoupling without Bloch-Siegert shifts in NMR spectroscopy. Nat Commun 9:3014
Nasr, Mahmoud L; Baptista, Diego; Strauss, Mike et al. (2017) Covalently circularized nanodiscs for studying membrane proteins and viral entry. Nat Methods 14:49-52
Coote, Paul; Anklin, Clemens; Massefski, Walter et al. (2017) Rapid convergence of optimal control in NMR using numerically-constructed toggling frames. J Magn Reson 281:94-103
Mallis, Robert J; Reinherz, Ellis L; Wagner, Gerhard et al. (2016) Backbone resonance assignment of N15, N30 and D10 T cell receptor ? subunits. Biomol NMR Assign 10:35-9

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