Protein arginine (arg) methylation is a common posttranslational modification of RNA binding proteins (RNA BPs) in yeast and mammals. In Trypanosoma brucei, gene regulation is largely effected posttranscriptionally, and thus likely involves a plethora of RNA BPs. For these reasons, we hypothesize that RNA BP arg methylation plays an especially important role trypanosome gene regulation. Previously, we showed that the mitochondrial RNA BP, RBP16, is an in vivo substrate of the protein arg methyltransferase (PRMT), TbPRMT1. Arg methylation increases the functional diversity of RBP16 and modulates its macromolecular interactions. Additionally, depletion of either TbPRMT1 or TbPRMT5 results in distinct defects in mitochondrial gene expression. We identified several additional RNA BPs and RNA metabolic enzymes that associate with T. brucei PRMTs. One of these is TbDed1, a predicted RNA helicase that is methylated by TbPRMT5, exhibits ATPase activity, and is essential for optimal procyclic form (PF) growth. Ongoing in vivo and in vitro analyses of the five TbPRMTs revealed that TbPRMT6 is essential for optimal PF growth, and TbPRMT7 is a novel kinetoplastid-specific type III PRMT. Our long-term goal is to understand the roles of protein arg methylation in T. brucei gene regulation, and here we propose four specific aims.
In Aim 1, we will use in vitro methylation assays and RNAi to complete the comprehensive assessment of T. brucei's capacity for protein arg methylation and evaluate the consequences of PRMT depletion for trypanosome growth and morphology. We will also address redundancy and cooperation of selected TbPRMT pairs by dual RNAi.
In Aim 2, a battery of novel methylproteins from mitochondria, nuclei, and cytosol will be identified by anti-methylarg immunoprecipitation/mass spectrometry.
In Aim 3, we will analyze the mechanisms by which arg methylation impacts mitochondrial gene expression. Using cells expressing distinct hypomethylated versions of the model methylprotein, RBP16, we will elucidate the roles of specific methylargs in mRNA stability and editing, higher order complex formation, and mRNA association. Proteins that read RBP16 methylmarks will be identified.
In Aim 4, we will determine the role of arg methylation in creating functional diversity in the DEAD box protein, TbDed1. Cells either depleted of TbDed1 or expressing predominantly hypomethylated TbDed1 will be assayed for gene regulatory functions including trans splicing, translation initiation, and the formation of cytoplasmic RNP granules implicated in RNA turnover and translational control. We will also determine the impact of methylation on TbDed1 ATPase, RNA helicase, and RNA annealing activities to address the molecular bases of cellular methylarg function. Collectively, the proposed studies will significantly increase our understanding of gene regulation in a medically and economically important parasite. They will also provide insight into novel functions of a common posttranslational modification in higher eukaryotes.

Public Health Relevance

The long-term goal of this project is to elucidate the roles protein arginine methylation in Trypanosoma brucei gene expression, particularly at the RNA level. These studies will greatly increase our understanding of gene regulation in a medically and economically important parasite. In addition, because the effects of arginine methylation on RNA metabolism are not well understood in general, they will also provide insight into a common posttranslational modification in higher eukaryotes.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
5R01AI060260-09
Application #
8457118
Study Section
Special Emphasis Panel (ZRG1-IDM-B (02))
Program Officer
Mcgugan, Glen C
Project Start
2003-09-15
Project End
2015-04-30
Budget Start
2013-05-01
Budget End
2014-04-30
Support Year
9
Fiscal Year
2013
Total Cost
$367,602
Indirect Cost
$134,952
Name
State University of New York at Buffalo
Department
Microbiology/Immun/Virology
Type
Schools of Medicine
DUNS #
038633251
City
Buffalo
State
NY
Country
United States
Zip Code
14260
Lott, Kaylen; Zhu, Lu; Fisk, John C et al. (2014) Functional interplay between protein arginine methyltransferases in Trypanosoma brucei. Microbiologyopen 3:595-609
Fisk, John C; Li, Jun; Wang, Hao et al. (2013) Proteomic analysis reveals diverse classes of arginine methylproteins in mitochondria of trypanosomes. Mol Cell Proteomics 12:302-11
Lott, Kaylen; Li, Jun; Fisk, John C et al. (2013) Global proteomic analysis in trypanosomes reveals unique proteins and conserved cellular processes impacted by arginine methylation. J Proteomics 91:210-25
Fisk, John C; Read, Laurie K (2011) Protein arginine methylation in parasitic protozoa. Eukaryot Cell 10:1013-22
Fisk, John C; Zurita-Lopez, Cecilia; Sayegh, Joyce et al. (2010) TbPRMT6 is a type I protein arginine methyltransferase that contributes to cytokinesis in Trypanosoma brucei. Eukaryot Cell 9:866-77
Fisk, John C; Sayegh, Joyce; Zurita-Lopez, Cecilia et al. (2009) A type III protein arginine methyltransferase from the protozoan parasite Trypanosoma brucei. J Biol Chem 284:11590-600
Duan, Peng; Xu, Ye; Birkaya, Barbara et al. (2007) Generation of polyclonal antiserum for the detection of methylarginine proteins. J Immunol Methods 320:132-42
Pasternack, Deborah A; Sayegh, Joyce; Clarke, Steven et al. (2007) Evolutionarily divergent type II protein arginine methyltransferase in Trypanosoma brucei. Eukaryot Cell 6:1665-81
Pelletier, Michel; Read, Laurie K; Aphasizhev, Ruslan (2007) Isolation of RNA binding proteins involved in insertion/deletion editing. Methods Enzymol 424:75-105
Goulah, Christopher C; Read, Laurie K (2007) Differential effects of arginine methylation on RBP16 mRNA binding, guide RNA (gRNA) binding, and gRNA-containing ribonucleoprotein complex (gRNP) formation. J Biol Chem 282:7181-90

Showing the most recent 10 out of 13 publications