Osteoporosis is a major public health problem mainly characterized by low bone mineral density (BMD). BMD has a heritability >60%. Under the current funding support (R01AR050496) (8/1/04-3/31/08), we tested a number of candidate genes with known functional importance for association with BMD variation. These genes may account for some but less than 10% heritability of BMD. This status leaves genetic determination of the remaining ~50% BMD variation to be identified, a challenge we embark to undertake here. The GOALS of this competitive renewal application are to: 1) identify NOVEL osteoporosis genes;2) assess their sex and ethnic specificity/generality;and 3) perform functional studies of the identified novel genes for their specific molecular functional mechanisms for BMD variation. This application builds upon the integration of the significant progress made by our multidisciplinary research team for this project (R01AR050496) and for our other ongoing projects (R01AG026564, R21AG027110, P50AR055081) for genetic/genomic/functional genomic/proteomic studies of osteoporosis. Two coherently integrated stages are proposed for an in-depth and comprehensive study. Stage 1 will identify novel genes with population and genomic/functional genomic statistical significance. Stage 2 will investigate the functional significance by studying specific molecular and cellular mechanisms of the identified novel genes. Stage 1 (Primary): Association studies of novel osteoporosis genes.
Aim I : Identification of novel genes - from multiple sources by joint and comprehensive consideration of evidence from genomics/functional genomics/proteomics studies, including the data from others and from our own completed/ongoing whole genome linkage scan and fine mapping studies (R01AG026564), genome-wide association, transcriptome and proteome studies (R21AG027110, P50AR055081).
Aim II : Recruit and phenotype 2,900 new unrelated Caucasian subjects, together with the 1,138 such subjects already recruited in our pilot recruitment study, we will have >4,000 subjects for this study.
Aim III : Candidate gene association analyses, for ~100 identified novel candidate genes for association with BMD variation in the 4,000 unrelated subjects and validate the significant association in 818 Caucasian nuclear families (already recruited by the current support R01AR050496).
Aim I V: Replication studies, in Chinese Han, US Caucasians, Blacks, and Mexican Americans. Stage 2 (Secondary): Functional studies of molecular and cellular mechanisms of novel significant genes identified, to be exemplified by studying the HDC and RUNX1 genes. HDC and RUNX1 genes were recently identified in our functional genomics studies and showed significant association with BMD variation in our follow- up population association analyses.
Aim I : To characterize the effects of individual potentially functional SNPs and haplotypes of HDC on gene expression and function, and their subsequent effects on osteoclastogenesis.
Aim II : To characterize the role of RUNX1 gene in osteoclastogenesis and bone resorption. Identifying genes for human BMD variation and gaining insights into the fundamental molecular mechanisms of risk to osteoporosis are important for 1) discovering new pathways and targets for therapeutic cures;2) identifying genetically susceptible individuals, so that future preventions and interventions can be targeted to and based on individuals'specific genotypes.

Public Health Relevance

Despite extensive studies in the past decade on gene identification of osteoporosis, critical gaps remain: All the tested known functional candidate genes can explain no more than 10% BMD variation in any human population, though >60% of BMD variation is attributable to genetic factors. Clearly, novel genes await discovery, and their functional mechanisms needs to be illuminated. This proposed project intends to undertake the challenge to contribute to fill in the above gaps: 1) We will use an integrated and innovative genomic convergence approach that combines results from genetic epidemiology, functional genomics, proteomics, animal models and the latest in vivo and in vitro molecular genetic studies to identify novel BMD candidate genes and infer some of their functions (at mRNA and protein levels). This is NOVEL in the field. 2) We will use both powerful and robust association approaches to test identified NOVEL genes for their importance on BMD variation and risk to osteoporosis for potential sex- specific effects and ethnic-specific or general effects in major ethnic groups. 3) We will pursue functional studies on molecular and cellular mechanisms of significant NOVEL genes to be identified, which will be exemplified by studying two specific novel genes HDC and RUNX1 that we recently identified. We expect this proposed project to lead to the identification of major novel genes underlying BMD variation. This project will actively and organically interact with the data from GWLS, GWA, and functional genomics studies that we already obtained and those to be obtained in both Caucasians and Chinese populations. Identifying such genes and gaining insights into the fundamental molecular mechanisms of risk to osteoporosis are important for 1) discovering new pathways and targets for therapeutic cures;2) identifying genetically susceptible individuals, so that early preventions and interventions can be targeted to and based on individuals'specific genotypes.

Agency
National Institute of Health (NIH)
Institute
National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS)
Type
Research Project (R01)
Project #
5R01AR050496-10
Application #
8327063
Study Section
Special Emphasis Panel (ZRG1-HOP-T (06))
Program Officer
Sharrock, William J
Project Start
2003-12-01
Project End
2014-06-30
Budget Start
2012-07-01
Budget End
2013-06-30
Support Year
10
Fiscal Year
2012
Total Cost
$399,675
Indirect Cost
$134,110
Name
Tulane University
Department
Biostatistics & Other Math Sci
Type
Schools of Public Health
DUNS #
053785812
City
New Orleans
State
LA
Country
United States
Zip Code
70118
Pei, Yu-Fang; Tian, Qing; Zhang, Lei et al. (2016) Exploring the Major Sources and Extent of Heterogeneity in a Genome-Wide Association Meta-Analysis. Ann Hum Genet 80:113-22
He, H; Liu, Y; Tian, Q et al. (2016) Relationship of sarcopenia and body composition with osteoporosis. Osteoporos Int 27:473-82
Dong, S-S; Guo, Y; Zhu, D-L et al. (2016) Epigenomic elements analyses for promoters identify ESRRG as a new susceptibility gene for obesity-related traits. Int J Obes (Lond) 40:1170-6
Xu, Chao; Wu, Kehao; Zhang, Ji-Gang et al. (2016) Low-, high-coverage, and two-stage DNA sequencing in the design of the genetic association study. Genet Epidemiol :
Niu, Tianhua; Liu, Ning; Yu, Xun et al. (2016) Identification of IDUA and WNT16 Phosphorylation-Related Non-Synonymous Polymorphisms for Bone Mineral Density in Meta-Analyses of Genome-Wide Association Studies. J Bone Miner Res 31:358-68
Yong, Bi-Cheng; Xun, Fu-Xing; Zhao, Lan-Juan et al. (2016) A systematic review of association studies of common variants associated with idiopathic congenital talipes equinovarus (ICTEV) in humans in the past 30 years. Springerplus 5:896
He, Hao; Cao, Shaolong; Niu, Tianhua et al. (2016) Network-Based Meta-Analyses of Associations of Multiple Gene Expression Profiles with Bone Mineral Density Variations in Women. PLoS One 11:e0147475
Guo, Yan; Dong, Shan-Shan; Chen, Xiao-Feng et al. (2016) Integrating Epigenomic Elements and GWASs Identifies BDNF Gene Affecting Bone Mineral Density and Osteoporotic Fracture Risk. Sci Rep 6:30558
Tan, Li-Jun; Wang, Zhuo-Er; Wu, Ke-Hao et al. (2015) Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche. J Clin Endocrinol Metab 100:E1457-66
Liu, Yao-Zhong; Zhou, Yu; Zhang, Lei et al. (2015) Attenuated monocyte apoptosis, a new mechanism for osteoporosis suggested by a transcriptome-wide expression study of monocytes. PLoS One 10:e0116792

Showing the most recent 10 out of 206 publications