The unique aspect of the biologically significant DNA damage associated with ionizing radiation is that this damage is clustered. It is therefore qualitatively distinct from that produced by UV radiation, or chemicals such as alkylating agents. The long-term goals of this work are to clarify the radiation chemical mechanisms by which DNA damage is introduced by ionizing radiation and by which it may be processed, modified, or repaired. This provides a means to evaluate the ability of cellular systems to cope with this damage. Applications to human health include defining the causes of individual variation in radiosensitivity (for example the role of anti-oxidants in protecting against radiation damage) and the development of mechanistic models for risk estimation of cancer etiology by low dose and low dose rate exposures. Our approach uses model systems in which DNA damage is detected as single strand breaks, double strand breaks, various base damages, and by its effect on the transformation efficiency of bacteria. The DNA substrates are plasmids and the SV4O minichromosome. The ionizing radiations include 7-rays and a-particles. To assess DNA damage, we will employ three new model systems that we have developed. These systems have been designed with the intention of concentrating upon the direct effect (ionization of the DNA itself), because this process is poorly understood in comparison with the indirect effect (DNA damage by solvent radicals). These model systems involve the use of DNA in the form of partially hydrated films, the reaction of DNA with one-electron oxidants, and the use of DNA in a highly associated form. Because the DNA damage is produced under well-defined conditions, a quantitative description of it can be made in terms of rate constants, lifetimes, and cluster sizes. The result will be an improved understanding of the mechanisms by which damage is introduced by energy deposition, is clustered and modified, leads to permanent products, and ultimately leads to biological and physiological endpoints.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
2R01CA046295-12A2
Application #
6472409
Study Section
Radiation Study Section (RAD)
Program Officer
Pelroy, Richard
Project Start
1988-12-15
Project End
2007-06-30
Budget Start
2002-07-01
Budget End
2003-06-30
Support Year
12
Fiscal Year
2002
Total Cost
$252,700
Indirect Cost
Name
University of California San Diego
Department
Radiation-Diagnostic/Oncology
Type
Schools of Medicine
DUNS #
077758407
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Lee, Melissa; Urata, Sarah M; Aguilera, Joe A et al. (2012) Modeling the influence of histone proteins on the sensitivity of DNA to ionizing radiation. Radiat Res 177:152-63
Konigsfeld, Katie M; Lee, Melissa; Urata, Sarah M et al. (2012) Free terminal amines in DNA-binding peptides alter the product distribution from guanine radicals produced by single electron oxidation. Int J Radiat Biol 88:230-8
Peoples, Anita R; Lee, Jane; Weinfeld, Michael et al. (2012) Yields of damage to C4' deoxyribose and to pyrimidines in pUC18 by the direct effect of ionizing radiation. Nucleic Acids Res 40:6060-9
Do, Trinh T; Tang, Vicky J; Konigsfeld, Katie et al. (2012) Damage clusters after gamma irradiation of a nanoparticulate plasmid DNA peptide condensate. Radiat Environ Biophys 51:43-52
Perry, Christopher C; Urata, Sarah M; Lee, Melissa et al. (2012) Radioprotective effects produced by the condensation of plasmid DNA with avidin and biotinylated gold nanoparticles. Radiat Environ Biophys 51:457-68
Tang, Vicky J; Konigsfeld, Katie M; Aguilera, Joe A et al. (2012) DNA Binding Hydroxyl Radical Probes. Radiat Phys Chem Oxf Engl 1993 81:46-51
Perry, Christopher C; Tang, Vicky J; Konigsfeld, Katie M et al. (2011) Use of a coumarin-labeled hexa-arginine peptide as a fluorescent hydroxyl radical probe in a nanoparticulate plasmid DNA condensate. J Phys Chem B 115:9889-97
Perry, Christopher C; Sabir, Theodore S; Livingston, Wesley J et al. (2011) Fluorescence of commercial Pluronic F127 samples: Temperature-dependent micellization. J Colloid Interface Sci 354:662-9
Do, Trinh T; Tang, Vicky J; Aguilera, Joe A et al. (2011) Characterization of a lipophilic plasmid DNA condensate formed with a cationic peptide fatty acid conjugate. Biomacromolecules 12:1731-7
Tsoi, Mandi; Do, Trinh T; Tang, Vicky J et al. (2010) Reduction of electron deficient guanine radical species in plasmid DNA by tyrosine derivatives. Org Biomol Chem 8:2553-9

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