The long-term goal of this competing continuation of grant (CA84199) is to understand the functions of tumor suppressor BRCA1 protein. We previously purified and identified a BRCA1 protein complex, BASC. The composition of this complex has led us to propose that BASC functions as genome surveillance complex in which the DNA repair proteins function in the upstream of the DNA damage response pathway to detect DNA lesions of different types. We will further test the genome surveillance complex hypothesis. Despite the mounting evidence that BRCA1 functions in DNA damage response, the precise roles of BRCA1 and its associated partners in the conceptual framework of DNA damage response need to be addressed. We hypothesize that TopBP1 functions as an adaptor and forms a checkpoint module with BRCA1 in response to DNA damage that parallels that of scRad9 and scRad53 in S. cerevisiae. This hypothesis thus expands the effector enzymatic activity to include an E3 ligase in the DNA damage response, adding to the effector enzymes of kinases so far (Chkl and Chk2). Furthermore, we propose that BRCA1 exerts its functions through its substrates. The many implicated functions of BRCA1 that are often seemingly unrelated and confusing may now be rationalized as the effects of different substrates. The identification of BRCA1 substrates through which the checkpoint activation is executed is another goal of this proposal.
The specific aims are (1) To test the hypothesis that RFC and/or BLM within the BASC function upstream in the response to DNA replication stress, (2) To purify BRCA1 complexes after DNA damage, (3) To test the hypothesis that TopBP1 and BRCA1 form a checkpoint module that parallels that of scRad9 and scRad53, and (4) To identify and characterize substrates of the BRCA1 ubiquitin ligase activity.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA084199-06
Application #
6948286
Study Section
Chemical Pathology Study Section (CPA)
Program Officer
Yassin, Rihab R,
Project Start
1999-12-01
Project End
2008-04-30
Budget Start
2005-07-01
Budget End
2006-04-30
Support Year
6
Fiscal Year
2005
Total Cost
$282,940
Indirect Cost
Name
Baylor College of Medicine
Department
Biochemistry
Type
Schools of Medicine
DUNS #
051113330
City
Houston
State
TX
Country
United States
Zip Code
77030
Fan, Yihui; Shi, Yi; Liu, Shangfeng et al. (2012) Lys48-linked TAK1 polyubiquitination at lysine-72 downregulates TNF*-induced NF-*B activation via mediating TAK1 degradation. Cell Signal 24:1381-9
Shi, Yi; Chan, Doug W; Jung, Sung Yun et al. (2011) A data set of human endogenous protein ubiquitination sites. Mol Cell Proteomics 10:M110.002089
Shi, Yi; Xu, Ping; Qin, Jun (2011) Ubiquitinated proteome: ready for global? Mol Cell Proteomics 10:R110.006882
Malovannaya, Anna; Lanz, Rainer B; Jung, Sung Yun et al. (2011) Analysis of the human endogenous coregulator complexome. Cell 145:787-99
Ding, Chen; Li, Yehua; Kim, Beom-Jun et al. (2011) Quantitative analysis of cohesin complex stoichiometry and SMC3 modification-dependent protein interactions. J Proteome Res 10:3652-9
Malovannaya, Anna; Li, Yehua; Bulynko, Yaroslava et al. (2010) Streamlined analysis schema for high-throughput identification of endogenous protein complexes. Proc Natl Acad Sci U S A 107:2431-6
Kim, Beom-Jun; Li, Yehua; Zhang, Jinglan et al. (2010) Genome-wide reinforcement of cohesin binding at pre-existing cohesin sites in response to ionizing radiation in human cells. J Biol Chem 285:22784-92
Leng, Mei; Bessuso, Dario; Jung, Sung Yun et al. (2008) Targeting Plk1 to chromosome arms and regulating chromosome compaction by the PICH ATPase. Cell Cycle 7:1480-9
Jung, Sung Yun; Li, Yehua; Wang, Yi et al. (2008) Complications in the assignment of 14 and 28 Da mass shift detected by mass spectrometry as in vivo methylation from endogenous proteins. Anal Chem 80:1721-9
Zhang, Jinglan; Shi, Xiaomin; Li, Yehua et al. (2008) Acetylation of Smc3 by Eco1 is required for S phase sister chromatid cohesion in both human and yeast. Mol Cell 31:143-51

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