EXCEED THE SPACE PROVIDED. This projectfocuses on the distributionof specifictobacco carcinogen-DNA adducts within the two genes frequently targeted in smoking induced lun9 cancer: the p53 tumor suppressor gene and the K-ras proto-oncogene. Lung tumors of smokersoften contain characteristic'hotspots' for point mutationswithin K-ras codon12 and p53 codons 157,158, 248, and 273. Thesemutations are believed to be a result of DNA polymerase errors durin9 the replication of DNA chemicallymodified by metabolically activated tobacco carcinogens. The large numbers of mutations atspecific sites of the K-rasand p53 genes may originatefrom their high reactivity towards tobacco carcinogens, deficientrepair of DNA lesions,or elevatedmispairin9 rates for the lesions within specificsequencecontext. While the mispairing rates of DNAlesions introducedin a defined sequenceenvironmentcan be accuratelyestablishedby sitespecific mutagenesis,analytical methods capableof mapping the formationand repair of specific DNA lesions within gene sequencesare lacking.The presentstudy will use a mass spectrometry.basedapproach recently developedin this laboratoryto quantifythe formationof DNA adducts at specific positionswithin p53 and K-ras.derived DNA sequences. The research willfocus on DNA damage induced by two prominenttobacco carcinogens, benzo[a]pyrene(B[a]P) and 4.(methylnitrosamino)-l-(3.pyridyl)-l-butanone (NNK). Double.stranded,synthetic oligodeoxynucleotidesrepresenting mutation-prone regions of the p53 and K-ras genes will be treated with reactive metabolitesof B[a]Pand NNK, and the extent of adduct formationat each positionwill be determinedby liquidchromatography.electrospray ionizationtandem mass spectrometryin combination with stableisotope labeling. The same approachwill be used to analyzethe effect of endogenouscytosine methylation on the formationof tobaccocarcinogen-inducedguanine lesionsand to determinethe effect of K-ras and p53 sequencecontext on the repair of NNK-inducedO6.alkylguanine adducts.These studieswill 1) Establish the distributionof B[a]Pdiolopoxide.induced nucleobaselesions within K-ras and p53-derived DNA sequencescontaining knownmutational hotspots. 2) Mapthe formation of NNK.inducedmothylated and pyridyloxobutylatedlesions along K-ras and p53-derivedDNA sequences. 3) Analyzethe effectsof endogenouscytosine methylationon the formation of B[a]P and NNK adducts at neighboringguanines. 4) Examinethe effects of K-ras sequencecontexton O6.alkylguanine DNA alkyltransferase-catalyzedrepair of NNK.inducedO6.alkylguanine lesions.The resultsof this work will afford new insights into the molecularbasis of genetic changesobserved in smoking-inducedlungcancer and will aid in the developmentof rationalpreventionstrategiesand mechanism-basedbiomarkersfor individuals at risk. This research will also laya foundationfor future in vivo studiesof carcinogen-modifiednucleobasesat singlenucleotide resolution. PERFORMANCE SITE ========================================Section End===========================================

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA095039-03
Application #
6827848
Study Section
Chemical Pathology Study Section (CPA)
Program Officer
Poland, Alan P
Project Start
2002-12-01
Project End
2006-11-30
Budget Start
2004-12-01
Budget End
2005-11-30
Support Year
3
Fiscal Year
2005
Total Cost
$200,094
Indirect Cost
Name
University of Minnesota Twin Cities
Department
Pharmacology
Type
Schools of Pharmacy
DUNS #
555917996
City
Minneapolis
State
MN
Country
United States
Zip Code
55455
Seiler, Christopher L; Fernandez, Jenna; Koerperich, Zoe et al. (2018) Maintenance DNA Methyltransferase Activity in the Presence of Oxidized Forms of 5-Methylcytosine: Structural Basis for Ten Eleven Translocation-Mediated DNA Demethylation. Biochemistry 57:6061-6069
Kotandeniya, D; Seiler, C L; Fernandez, J et al. (2018) Can 5-methylcytosine analogues with extended alkyl side chains guide DNA methylation? Chem Commun (Camb) 54:1061-1064
Ji, Shaofei; Shao, Hongzhao; Han, Qiyuan et al. (2017) Reversible DNA-Protein Cross-Linking at Epigenetic DNA Marks. Angew Chem Int Ed Engl 56:14130-14134
Pujari, Suresh S; Tretyakova, Natalia (2017) Chemical Biology of N5-Substituted Formamidopyrimidine DNA Adducts. Chem Res Toxicol 30:434-452
Wickramaratne, Susith; Seiler, Christopher L; Tretyakova, Natalia Y (2015) Synthesis of DNA Oligodeoxynucleotides Containing Site-Specific 1,3-Butadiene-Deoxyadenosine Lesions. Curr Protoc Nucleic Acid Chem 61:4.61.1-22
Ming, Xun; Matter, Brock; Song, Matthew et al. (2014) Mapping structurally defined guanine oxidation products along DNA duplexes: influence of local sequence context and endogenous cytosine methylation. J Am Chem Soc 136:4223-35
Kotandeniya, Delshanee; Murphy, Daniel; Yan, Shuo et al. (2013) Kinetics of O(6)-pyridyloxobutyl-2'-deoxyguanosine repair by human O(6)-alkylguanine DNA alkyltransferase. Biochemistry 52:4075-88
Tretyakova, Natalia; Villalta, Peter W; Kotapati, Srikanth (2013) Mass spectrometry of structurally modified DNA. Chem Rev 113:2395-436
Kim, Min Young; Lim, Chang Hoon; Trudel, Laura J et al. (2012) Delivery method, target gene structure, and growth properties of target cells impact mutagenic responses to reactive nitrogen and oxygen species. Chem Res Toxicol 25:873-83
Tretyakova, Natalia; Goggin, Melissa; Sangaraju, Dewakar et al. (2012) Quantitation of DNA adducts by stable isotope dilution mass spectrometry. Chem Res Toxicol 25:2007-35

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