Environmental and endogenous exposure to chemicals that produce DNA-protein and DNA-peptide crosslinks are correlated with an increased risk of cancer, asthma, and other diseases. These exposures take place in both occupational and in-home settings and affected individuals often experience multi-year chronic exposures that are far in excess of typical indoor air quality standards. One of the most common DNA-protein crosslink-inducing agents is formaldehyde and currently thousands of individuals in the US population are exposed to this and other aldehydic compounds. To understand the biological processing of these DNA lesions, our laboratories have i) established synthetic chemical procedures to create DNAs containing site-specifically modified DNA-protein crosslinks, ii) identified DNA polymerases that are capable of catalyzing translesion synthesis of these lesions, and iii) carried out dose-dependent, genome-wide assays that identified genes whose products function to limit DNA-protein crosslink- induced cytotoxicity. These investigations have generated a series of hypotheses which postulate that when eukaryotic cells are exposed to chronic, low levels of DNA-protein crosslinking agents, cytotoxicity and mutagenesis are minimized by tolerance pathways involving homologous recombination. However, following acute high dose exposures, it is hypothesized that cells will shift to pathways involving components of either nucleotide excision repair or translesion synthesis. To address these hypotheses, gene-specific deletions or siRNA depletion and small molecular inhibitors will be used to identify the constellation of genes and interrelated pathways that are critical in limiting cellular toxicity and mutagenesis. Possible roles of individual gene products in modulating cellular responses to DNA-protein crosslinks may include involvement in DNA repair, recombination, translesion synthesis, cell cycle check points, and proteolytic pathways. Biochemical analyses of repair intermediates and the activities of helicases and translesion synthesis polymerases will be established using DNAs containing site-specific DNA-peptide and protein crosslinks. Collectively, these investigations will yield comprehensive analyses of repair and tolerance of this class of DNA lesions.

Public Health Relevance

This application is highly germane to public health and occupational toxicant exposures because it focuses on the mechanism of toxicity and mutagenicity associated with chemicals that cause covalent linkage between DNA and proteins. The best known among these chemicals is formaldehyde which is used in the manufacture of pressed board products, such as particle board and plywood, as well as in some glues and insulation. Inhalation of these DNA-protein crosslinking agents is associated with elevated cancer, asthma and nasopharyngeal irritation.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA106858-08
Application #
8270450
Study Section
Cancer Etiology Study Section (CE)
Program Officer
Okano, Paul
Project Start
2004-06-01
Project End
2016-03-31
Budget Start
2012-04-01
Budget End
2013-03-31
Support Year
8
Fiscal Year
2012
Total Cost
$277,488
Indirect Cost
$97,301
Name
Oregon Health and Science University
Department
Neurosciences
Type
Schools of Medicine
DUNS #
096997515
City
Portland
State
OR
Country
United States
Zip Code
97239
Kasiviswanathan, Rajesh; Minko, Irina G; Lloyd, R Stephen et al. (2013) Translesion synthesis past acrolein-derived DNA adducts by human mitochondrial DNA polymerase ýý. J Biol Chem 288:14247-55
Kumari, Anuradha; Lim, Yun Xin; Newell, Amy Hanlon et al. (2012) Formaldehyde-induced genome instability is suppressed by an XPF-dependent pathway. DNA Repair (Amst) 11:236-46
Yamanaka, Kinrin; Minko, Irina G; Finkel, Steven E et al. (2011) Role of high-fidelity Escherichia coli DNA polymerase I in replication bypass of a deoxyadenosine DNA-peptide cross-link. J Bacteriol 193:3815-21
Yamanaka, Kinrin; Minko, Irina G; Takata, Kei-ichi et al. (2010) Novel enzymatic function of DNA polymerase nu in translesion DNA synthesis past major groove DNA-peptide and DNA-DNA cross-links. Chem Res Toxicol 23:689-95
Kumari, Anuradha; Minko, Irina G; Smith, Rebecca L et al. (2010) Modulation of UvrD helicase activity by covalent DNA-protein cross-links. J Biol Chem 285:21313-22
Huang, Hai; Kozekov, Ivan D; Kozekova, Albena et al. (2010) Minor groove orientation of the KWKK peptide tethered via the N-terminal amine to the acrolein-derived 1,N2-gamma-hydroxypropanodeoxyguanosine lesion with a trimethylene linkage. Biochemistry 49:6155-64
de Graaf, Bendert; Clore, Adam; McCullough, Amanda K (2009) Cellular pathways for DNA repair and damage tolerance of formaldehyde-induced DNA-protein crosslinks. DNA Repair (Amst) 8:1207-14
Minko, Irina G; Kozekov, Ivan D; Kozekova, Albena et al. (2008) Mutagenic potential of DNA-peptide crosslinks mediated by acrolein-derived DNA adducts. Mutat Res 637:161-72
Minko, Irina G; Yamanaka, Kinrin; Kozekov, Ivan D et al. (2008) Replication bypass of the acrolein-mediated deoxyguanine DNA-peptide cross-links by DNA polymerases of the DinB family. Chem Res Toxicol 21:1983-90
Minko, Irina G; Kurtz, Andrew J; Croteau, Deborah L et al. (2005) Initiation of repair of DNA-polypeptide cross-links by the UvrABC nuclease. Biochemistry 44:3000-9

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