Copper sites in biology activate dioxygen for electrophilic aromatic attack and hydrogen atom abstraction, catalyze the 4-electron reduction of dioxygen to water, and activate substrates for the spin-forbidden reaction with O2. These function as monooxygenases, dioxygenases and oxidases, perform cofactor biogenesis and proton pumping, and generate deleterious reactive oxygen species (ROS). The copper proteins and their study are considered in four classes based on structural type and function: (1) enzymes that have coupled binuclear copper sites; (2) enzymes with multi-metal centers that catalyze the 4-electron reductive cleavage of O-O bonds; (3) enzymes that utilize a single reduced, Cu(I), center to activate O2; and (4) those that require an oxidized Cu(II) center to activate substrates. Intermediates in these systems exhibit unique spectral features that reflect novel geometric and electronic structures that are key to their reactivities. This research program utilizes and develops a wide range of spectroscopic methods and the analyses of unique spectral data to elucidate reaction coordinates that provide fundamental insight into biological function. Our research effort, directed across all four classes of copper proteins, both defines their specific reaction mechanisms and the role of the protein environment in tuning reactivity, and broadly determines why specific active site structures have evolved for their efficient and selective functions in Nature. These studies provide molecular level insight into reactivity, and are of fundamental importance towards understanding pathogenesis and providing structural and mechanistic insight for drug design, medical device development, and the generation of new catalysts.

Public Health Relevance

Copper enzymes are important in the biosynthesis of natural products,1 melanins,2 hormones and neurotransmitters;3-6 proton pumping for ATP synthesis;7-9 iron metabolism;10-12 the generation of reactive oxygen species (ROS) in neurodegenerative diseases;13,14 and biofuel cells for implantable devices;15-17 and are related to a number of human diseases (Parkinson's disease,18-20 aceruloplasminemia,10,11,21 oculocutaneous albinism,22-24 Alzheimer's disease,25 etc.). Understanding their reactivity and control of function on a molecular level contributes to human health and biotechnology by enabling rational drug and device development and uncovering the molecular basis of disease states.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project (R01)
Project #
5R01DK031450-39
Application #
9766251
Study Section
Special Emphasis Panel (ZRG1)
Program Officer
Sechi, Salvatore
Project Start
1982-01-01
Project End
2020-08-31
Budget Start
2019-09-01
Budget End
2020-08-31
Support Year
39
Fiscal Year
2019
Total Cost
Indirect Cost
Name
Stanford University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
009214214
City
Stanford
State
CA
Country
United States
Zip Code
94305
Meier, Katlyn K; Jones, Stephen M; Kaper, Thijs et al. (2018) Oxygen Activation by Cu LPMOs in Recalcitrant Carbohydrate Polysaccharide Conversion to Monomer Sugars. Chem Rev 118:2593-2635
Bhadra, Mayukh; Lee, Jung Yoon C; Cowley, Ryan E et al. (2018) Intramolecular Hydrogen Bonding Enhances Stability and Reactivity of Mononuclear Cupric Superoxide Complexes. J Am Chem Soc 140:9042-9045
Johnston, Esther M; Carreira, Cíntia; Dell'Acqua, Simone et al. (2017) Spectroscopic Definition of the CuZ° Intermediate in Turnover of Nitrous Oxide Reductase and Molecular Insight into the Catalytic Mechanism. J Am Chem Soc 139:4462-4476
Garcia-Bosch, Isaac; Cowley, Ryan E; Díaz, Daniel E et al. (2017) Substrate and Lewis Acid Coordination Promote O-O Bond Cleavage of an Unreactive L2CuII2(O22-) Species to Form L2CuIII2(O)2 Cores with Enhanced Oxidative Reactivity. J Am Chem Soc 139:3186-3195
de Poulpiquet, Anne; Kjaergaard, Christian H; Rouhana, Jad et al. (2017) Mechanism of chloride inhibition of bilirubin oxidases and its dependence on potential and pH. ACS Catal 7:3916-3923
Hansson, Henrik; Karkehabadi, Saeid; Mikkelsen, Nils et al. (2017) High-resolution structure of a lytic polysaccharide monooxygenase from Hypocrea jecorina reveals a predicted linker as an integral part of the catalytic domain. J Biol Chem 292:19099-19109
Adam, Suzanne M; Garcia-Bosch, Isaac; Schaefer, Andrew W et al. (2017) Critical Aspects of Heme-Peroxo-Cu Complex Structure and Nature of Proton Source Dictate Metal-O(peroxo) Breakage versus Reductive O-O Cleavage Chemistry. J Am Chem Soc 139:472-481
Sharma, Savita K; Schaefer, Andrew W; Lim, Hyeongtaek et al. (2017) A Six-Coordinate Peroxynitrite Low-Spin Iron(III) Porphyrinate Complex-The Product of the Reaction of Nitrogen Monoxide (·NO(g)) with a Ferric-Superoxide Species. J Am Chem Soc 139:17421-17430
Schaefer, Andrew W; Kieber-Emmons, Matthew T; Adam, Suzanne M et al. (2017) Phenol-Induced O-O Bond Cleavage in a Low-Spin Heme-Peroxo-Copper Complex: Implications for O2 Reduction in Heme-Copper Oxidases. J Am Chem Soc 139:7958-7973
Cao, Rui; Saracini, Claudio; Ginsbach, Jake W et al. (2016) Peroxo and Superoxo Moieties Bound to Copper Ion: Electron-Transfer Equilibrium with a Small Reorganization Energy. J Am Chem Soc 138:7055-66

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