X-ray diffraction data is by far the main source of 3-dimensional structure information at atomic resolution for proteins. While a great deal of information is potentially available from this technique, its application requires the ability to prepare crystals of size and order suitable for X-ray analysis. This has proved especially difficult for membrane proteins. Cytochrome reductase (the cytochrome bc1 complex) is a membrane protein complex which makes up the middle segment of the mitochondrial respiratory chain. The respiratory chain is responsible for biological oxidation and for conservation of the energy released in the form of a proton electrochemical potential gradient across the mitochondrial inner membrane. Energy from this gradient is then used to synthesize ATP or to do work by transporting substances across the membrane. In recent years a number of mitochondrial myopathies have been shown to be due to defects in the mitochondrial electron transport chain and in some cases in cytochrome reductase. We have recently developed a procedure for preparing crystals of bovine heart mitochondrial cytochrome reductase. In addition to needle shaped crystals, which have been reported by other workers, we have obtained crystals in the shape of hexagonal bipyramids. These can be produced with a good rate of success by using a seeding technique. It seems likely that these crystal forms, when conditions for growth are optimized and crystals are larger, will prove suitable for X-ray diffraction analysis and eventually lead to a 3-dimensional structure of the complex at atomic resolution. The purpose of the research proposed here is to find conditions for growth of such suitable crystals. The effort will be applied to (1) improving the homogeneity of the purified enzyme, (2) choosing additives such as specific inhibitors or substrates that may stabilize one particular conformation of the enzyme, and (3) optimizing conditions of crystallization (temperature, ionic strength, protein concentration, precipitant species and concentration, detergent, and specific ions). Results will be monitored by size of the crystals obtained and by X-ray diffraction intensity and resolution. Once suitable crystals are available the effort will shift to collection of diffraction data and obtaining suitable heavy atom derivatives for subsequent structure determination.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project (R01)
Project #
5R01DK044842-03
Application #
2144105
Study Section
Molecular and Cellular Biophysics Study Section (BBCA)
Project Start
1992-03-01
Project End
1995-02-28
Budget Start
1994-03-01
Budget End
1995-02-28
Support Year
3
Fiscal Year
1994
Total Cost
Indirect Cost
Name
University of California Berkeley
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
094878337
City
Berkeley
State
CA
Country
United States
Zip Code
94704
Charvolin, Delphine; Picard, Martin; Huang, Li-Shar et al. (2014) Solution behavior and crystallization of cytochrome bc? in the presence of amphipols. J Membr Biol 247:981-96
Berry, Edward A; Huang, Li-Shar; Lee, Dong-Woo et al. (2010) Ascochlorin is a novel, specific inhibitor of the mitochondrial cytochrome bc1 complex. Biochim Biophys Acta 1797:360-70
Crowley, Patrick J; Berry, Edward A; Cromartie, Thomas et al. (2008) The role of molecular modeling in the design of analogues of the fungicidal natural products crocacins A and D. Bioorg Med Chem 16:10345-55
Berry, Edward A; Walker, F Ann (2008) Bis-histidine-coordinated hemes in four-helix bundles: how the geometry of the bundle controls the axial imidazole plane orientations in transmembrane cytochromes of mitochondrial complexes II and III and related proteins. J Biol Inorg Chem 13:481-98
Giachini, Lisa; Francia, Francesco; Veronesi, Giulia et al. (2007) X-Ray absorption studies of Zn2+ binding sites in bacterial, avian, and bovine cytochrome bc1 complexes. Biophys J 93:2934-51
Huang, Li-Shar; Shen, John T; Wang, Andy C et al. (2006) Crystallographic studies of the binding of ligands to the dicarboxylate site of Complex II, and the identity of the ligand in the ""oxaloacetate-inhibited"" state. Biochim Biophys Acta 1757:1073-83
Huang, Li Shar; Borders, Toni M; Shen, John T et al. (2005) Crystallization of mitochondrial respiratory complex II from chicken heart: a membrane-protein complex diffracting to 2.0 A. Acta Crystallogr D Biol Crystallogr 61:380-7
Huang, Li-Shar; Cobessi, David; Tung, Eric Y et al. (2005) Binding of the respiratory chain inhibitor antimycin to the mitochondrial bc1 complex: a new crystal structure reveals an altered intramolecular hydrogen-bonding pattern. J Mol Biol 351:573-97
Bowman, Michael K; Berry, Edward A; Roberts, Arthur G et al. (2004) Orientation of the g-tensor axes of the Rieske subunit in the cytochrome bc1 complex. Biochemistry 43:430-6
Berry, Edward A; Huang, Li-shar (2003) Observations concerning the quinol oxidation site of the cytochrome bc1 complex. FEBS Lett 555:13-20

Showing the most recent 10 out of 25 publications