Calbindin-D28K is a biologically essential calcium-binding protein of unknown tertiary structure that is required for normal neural function. The protein also plays an important role in the transport of calcium in epithelial cells of the intestine and kidney. The objective of this grant application is to determine the solution tertiary structure of calbindin-D28K in calcium-free and calcium-bound forms by use of high resolution nuclear magnetic resonance (NMR) spectroscopy, to determine what structural changes occur upon the binding of increasing amounts of calcium to the protein, and to thereby gain insights into the mechanism of action of the protein. The hypothesis of this grant application is that calbindin-D28K, a biologically essential, EF-hand, calcium-binding protein, has a unique tertiary structure which undergoes conformational changes upon binding calcium.
The specific aims are: (1) To obtain, using high-resolution nuclear magnetic resonance (NMR) spectroscopy, the solution tertiary structure of the calcium-free and the calcium-saturated forms of calbindin-D28K. (2) To determine the sequential structural changes which occur upon binding of calcium to calbindin-D28K. (3) To determine the effects of deletions of specific EF-hands in calbindin-D28K on the structure and calcium-binding properties of calbindin-D28K. The techniques to be used include: high resolution 1H, 15N and 13C nuclear magnetic resonance spectroscopy of the full-length and mutant calbindins; electrospray ionization mass spectrometry; lanthanide fluorescence spectroscopy; and intrinsic protein fluorescence determinations in the near and far UV-range. The project is of significance because the tertiary structure of calbindin-D28k in the presence and absence of calcium is unknown, the effects of initial calcium binding on global protein structure remain to be determined, and information on how the protein folds could provide insight into how it acts within cells. These findings will potentially be of significance in the understanding of neurodegenerative disorders, cerebellar function and long-term hippocampal potentiation.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project (R01)
Project #
1R01DK058546-01
Application #
6225361
Study Section
General Medicine B Study Section (GMB)
Program Officer
Sechi, Salvatore
Project Start
2001-02-15
Project End
2005-01-31
Budget Start
2001-02-15
Budget End
2002-01-31
Support Year
1
Fiscal Year
2001
Total Cost
$190,162
Indirect Cost
Name
Mayo Clinic, Rochester
Department
Type
DUNS #
City
Rochester
State
MN
Country
United States
Zip Code
55905
Griffin, Matthew D; Dong, Xiangyang; Kumar, Rajiv (2007) Vitamin D receptor-mediated suppression of RelB in antigen presenting cells: a paradigm for ligand-augmented negative transcriptional regulation. Arch Biochem Biophys 460:218-26
Berndt, Theresa; Kumar, Rajiv (2007) Phosphatonins and the regulation of phosphate homeostasis. Annu Rev Physiol 69:341-59
Craig, Theodore A; Benson, Linda M; Bergen 3rd, H Robert et al. (2006) Metal-binding properties of human centrin-2 determined by micro-electrospray ionization mass spectrometry and UV spectroscopy. J Am Soc Mass Spectrom 17:1158-71
Thompson, James R; Ryan, Zachary C; Salisbury, Jeffrey L et al. (2006) The structure of the human centrin 2-xeroderma pigmentosum group C protein complex. J Biol Chem 281:18746-52
Venters, Ronald A; Coggins, Brian E; Kojetin, Doug et al. (2005) (4,2)D Projection--reconstruction experiments for protein backbone assignment: application to human carbonic anhydrase II and calbindin D(28K). J Am Chem Soc 127:8785-95
Berndt, Theresa J; Schiavi, Susan; Kumar, Rajiv (2005) ""Phosphatonins"" and the regulation of phosphorus homeostasis. Am J Physiol Renal Physiol 289:F1170-82
Tebben, Peter J; Kalli, Kimberly R; Cliby, William A et al. (2005) Elevated fibroblast growth factor 23 in women with malignant ovarian tumors. Mayo Clin Proc 80:745-51
Dong, Xiangyang; Lutz, Ward; Schroeder, Tania M et al. (2005) Regulation of relB in dendritic cells by means of modulated association of vitamin D receptor and histone deacetylase 3 with the promoter. Proc Natl Acad Sci U S A 102:16007-12
Schiavi, Susan C; Kumar, Rajiv (2004) The phosphatonin pathway: new insights in phosphate homeostasis. Kidney Int 65:1-14
Venters, Ronald A; Benson, Linda M; Craig, Theodore A et al. (2003) The effects of Ca(2+) binding on the conformation of calbindin D(28K): a nuclear magnetic resonance and microelectrospray mass spectrometry study. Anal Biochem 317:59-66

Showing the most recent 10 out of 28 publications