The encapsulation of proteins in porous sol-gels has captured the attention of both applied and basic research scientists because the encapsulated proteins retain functional activity and exhibit enhanced stability. Despite the widespread interest in using this technology to develop new classes of robust biosensors, no in-depth biophysical study of protein response to sol-gel encapsulation has been carried out. The project proposed herein will systematically examine the impact of three promising encapsulation protocols on the conformation and dynamics of the well-characterized heme proteins, hemoglobin and myoglobin. We have probed the solution-phase conformation - secondary through quaternary - of these heme proteins with a myriad of laser-based time-resolved and steady state spectroscopic techniques, and are therefore uniquely qualified to examine the dynamic and static heme protein/sol-gel interactions. The spectroscopic tools at our fingertips include: CW UV resonance Raman, CW and time-resolved visible resonance Raman, time-resolved near IR absorption, time resolved fluorescence anisotropy and fluorescence lifetime measurements. Subtle as well as large-scale conformational changes and the associated dynamics are probed when combining these techniques. In addition, nanosecond, time-resolved absorption spectroscopy will primarily be used to characterize the ligand rebinding kinetics of the heme proteins in the sol-gels. It is anticipated that this comprehensive study will result in an algorithm for matching an encapsulation protocol to a particular biomedical or biophysical application.

Agency
National Institute of Health (NIH)
Institute
National Institute of Biomedical Imaging and Bioengineering (NIBIB)
Type
Research Project (R01)
Project #
8R01EB000296-03
Application #
6530743
Study Section
Special Emphasis Panel (ZRG1-SSS-M (01))
Program Officer
Moy, Peter
Project Start
2000-03-01
Project End
2004-02-28
Budget Start
2002-03-01
Budget End
2003-02-28
Support Year
3
Fiscal Year
2002
Total Cost
$332,083
Indirect Cost
Name
Albert Einstein College of Medicine
Department
Physiology
Type
Schools of Medicine
DUNS #
009095365
City
Bronx
State
NY
Country
United States
Zip Code
10461
Juszczak, Laura J; Desamero, Ruel Z B (2009) Extension of the tryptophan chi2,1 dihedral angle-W3 band frequency relationship to a full rotation: correlations and caveats. Biochemistry 48:2777-87
Samuni, Uri; Dantsker, David; Roche, Camille J et al. (2007) Ligand recombination and a hierarchy of solvent slaved dynamics: the origin of kinetic phases in hemeproteins. Gene 398:234-48
Samuni, Uri; Roche, Camille J; Dantsker, David et al. (2006) Modulation of reactivity and conformation within the T-quaternary state of human hemoglobin: the combined use of mutagenesis and sol-gel encapsulation. Biochemistry 45:2820-35
Dantsker, David; Roche, Camille; Samuni, Uri et al. (2005) The position 68(E11) side chain in myoglobin regulates ligand capture, bond formation with heme iron, and internal movement into the xenon cavities. J Biol Chem 280:38740-55
Dantsker, David; Samuni, Uri; Friedman, Joel M et al. (2005) A hierarchy of functionally important relaxations within myoglobin based on solvent effects, mutations and kinetic model. Biochim Biophys Acta 1749:234-51
Dantsker, David; Samuni, Uri; Ouellet, Yannick et al. (2004) Viscosity-dependent relaxation significantly modulates the kinetics of CO recombination in the truncated hemoglobin TrHbN from Mycobacterium tuberculosis. J Biol Chem 279:38844-53
Peterson, Eric S; Shinder, Roman; Khan, Imran et al. (2004) Domain-specific effector interactions within the central cavity of human adult hemoglobin in solution and in porous sol-gel matrices: evidence for long-range communication pathways. Biochemistry 43:4832-43
Das, Tapan K; Samuni, Uri; Lin, Yu et al. (2004) Distal heme pocket conformers of carbonmonoxy derivatives of Ascaris hemoglobin: evidence of conformational trapping in porous sol-gel matrices. J Biol Chem 279:10433-41
Samuni, Uri; Ouellet, Yannick; Guertin, Michel et al. (2004) The absence of proximal strain in the truncated hemoglobins from Mycobacterium tuberculosis. J Am Chem Soc 126:2682-3
Ouellet, Hugues; Juszczak, Laura; Dantsker, David et al. (2003) Reactions of Mycobacterium tuberculosis truncated hemoglobin O with ligands reveal a novel ligand-inclusive hydrogen bond network. Biochemistry 42:5764-74

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