New imaging modalities such as functional magnetic resonance imaging (fMRI) have helped advance our understanding of human brain function. Researchers are interested in using these techniques to study both effects of external stimuli on human brain function and causal relations among different brain regions. The concern with causal issues has prompted much work, with empirical researchers applying various statistical procedures (e.g., Granger causality, dynamic causal models, structural equation and directed graphical models) to fMRI data and interpreting the resulting associations as effects, often inappropriately. This is a major problem for a field where causation occupies center stage. Building on the idea that causal relationships sustain counterfactual conditional statements, we use potential outcomes notation, widely used in the statistical literature, to develop a basic framework for causal inference in fMRI research. We also extend the statistical literature on mediation, which mostly takes up the case of a treatment, a single mediator and a single response, to the case of multiple functional mediators. In addition to helping push the field of functional neuroimaging forward, we contribute to the research on causal inference, functional data analysis and longitudinal data analysis. We develop methods for causal inference with high dimensional data, applying these to fMRI data from studies of post-traumatic stress disorder, thermal pain and social evaluation.

Public Health Relevance

A general framework for causal inference in functional magnetic resonance imaging (fMRI) is developed, using the potential outcomes notation widely used in the statistical literature. The framework and methods developed will be useful for studying brain networks, neurosurgical planning and the development of brain-based biomarkers. We also expect the methods to be useful in other applied contexts where high dimensional longitudinal data are collected and/or responses are measured with error.

Agency
National Institute of Health (NIH)
Institute
National Institute of Biomedical Imaging and Bioengineering (NIBIB)
Type
Research Project (R01)
Project #
5R01EB016061-02
Application #
8681440
Study Section
Biostatistical Methods and Research Design Study Section (BMRD)
Program Officer
Pai, Vinay Manjunath
Project Start
2013-07-01
Project End
2017-05-31
Budget Start
2014-06-01
Budget End
2015-05-31
Support Year
2
Fiscal Year
2014
Total Cost
Indirect Cost
Name
Johns Hopkins University
Department
Biostatistics & Other Math Sci
Type
Schools of Public Health
DUNS #
City
Baltimore
State
MD
Country
United States
Zip Code
21218
Nguyen, Trang Quynh; Webb-Vargas, Yenny; Koning, Ina M et al. (2016) Causal mediation analysis with a binary outcome and multiple continuous or ordinal mediators: Simulations and application to an alcohol intervention. Struct Equ Modeling 23:368-383
Lindquist, Martin A; Mejia, Amanda (2015) Zen and the art of multiple comparisons. Psychosom Med 77:114-25
Mejia, Amanda F; Nebel, Mary Beth; Shou, Haochang et al. (2015) Improving reliability of subject-level resting-state fMRI parcellation with shrinkage estimators. Neuroimage 112:14-29
Choe, Ann S; Jones, Craig K; Joel, Suresh E et al. (2015) Reproducibility and Temporal Structure in Weekly Resting-State fMRI over a Period of 3.5 Years. PLoS One 10:e0140134
Xu, Yuting; Lindquist, Martin A (2015) Dynamic connectivity detection: an algorithm for determining functional connectivity change points in fMRI data. Front Neurosci 9:285
Yu, Wen; Chen, Kani; Sobel, Michael E et al. (2015) Semiparametric transformation models for causal inference in time to event studies with all-or-nothing compliance. J R Stat Soc Series B Stat Methodol 77:397-415
Atlas, Lauren Y; Lindquist, Martin A; Bolger, Niall et al. (2014) Brain mediators of the effects of noxious heat on pain. Pain 155:1632-48
Woo, Choong-Wan; Koban, Leonie; Kross, Ethan et al. (2014) Separate neural representations for physical pain and social rejection. Nat Commun 5:5380
Degras, David; Lindquist, Martin A (2014) A hierarchical model for simultaneous detection and estimation in multi-subject fMRI studies. Neuroimage 98:61-72
Lindquist, Martin A; Xu, Yuting; Nebel, Mary Beth et al. (2014) Evaluating dynamic bivariate correlations in resting-state fMRI: a comparison study and a new approach. Neuroimage 101:531-46

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