Recent advance of genomic sciences has significantly changed the landscape of environmental health science research. Collection of high throughput genomic data has become increasingly important for investigating the interplay of genes and environment in causing human diseases in environmental case-control and cohort studies. Analysis of such high-dimensional gene-environmental data presents substantial statistical and computational challenges, especially in investigating gene and environment interactions. Limited statistical developments have been made in this area so far. This methodological shortage has become a bottleneck for effectively studying the roles of genes and their interactions with environment in causing human diseases. The purpose of this proposal responds to this need by developing advanced semi-parametric statistical methods to analyze high throughput data from gene and environment studies. We plan (1) to develop semi-parametric locally efficient methods for double-robust estimation in a case-control study, of a model for the joint effect of a genetic factor, an environmental exposure and multiple extraneous confounding factors, (2) to develop semi-parametric methods for multiple robust estimation in cohort and case-control studies, of a model of interaction between a genetic factor and an environmental exposure in the effect that they produce on a binary disease outcome, (3) to develop semi-parametric methods for double robust inferences of genetic effects incorporating gene-environment interaction and confounding adjustment in a Cox proportional hazards model for censored survival data and (4) develop efficient and open access user-friendly algorithms and statistical software that implement these methods with the goal of disseminating them freely to the gene-environment research community. In addition, we will evaluate the performance of our methods in three ongoing GWAS we have been involved with as well as in simulation studies.

Public Health Relevance

The proposed project will develop cutting edge methods for discovery of novel genes and gene-environment interaction while efficiently incorporating prior knowledge. The impact of these methods to the field of public health promises to be significant through the development of improved methodology for robust investigation of the interplay of genes and environment in causing human diseases in environmental case-control and cohort studies.

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Research Project (R01)
Project #
1R01ES020337-01A1
Application #
8295644
Study Section
Biostatistical Methods and Research Design Study Section (BMRD)
Program Officer
Mcallister, Kimberly A
Project Start
2012-07-20
Project End
2016-04-30
Budget Start
2012-07-20
Budget End
2013-04-30
Support Year
1
Fiscal Year
2012
Total Cost
$343,246
Indirect Cost
$118,246
Name
Harvard University
Department
Public Health & Prev Medicine
Type
Schools of Public Health
DUNS #
149617367
City
Boston
State
MA
Country
United States
Zip Code
02115
Tchetgen Tchetgen, Eric (2014) The control outcome calibration approach for causal inference with unobserved confounding. Am J Epidemiol 179:633-40
Chang, Shun-Chiao; Glymour, M Maria; Rewak, Marissa et al. (2014) Are genetic variations in OXTR, AVPR1A, and CD38 genes important to social integration? Results from two large U.S. cohorts. Psychoneuroendocrinology 39:257-68
VanderWeele, Tyler J; Tchetgen Tchetgen, Eric J (2014) Attributing effects to interactions. Epidemiology 25:711-22
Tchetgen Tchetgen, Eric J; Vanderweele, Tyler J (2014) Identification of natural direct effects when a confounder of the mediator is directly affected by exposure. Epidemiology 25:282-91
Wirth, Kathleen E; Tchetgen Tchetgen, Eric J (2014) Accounting for selection bias in association studies with complex survey data. Epidemiology 25:444-53
Young, Jessica G; Tchetgen Tchetgen, Eric J (2014) Simulation from a known Cox MSM using standard parametric models for the g-formula. Stat Med 33:1001-14
VanderWeele, Tyler J; Tchetgen Tchetgen, Eric J; Cornelis, Marilyn et al. (2014) Methodological challenges in mendelian randomization. Epidemiology 25:427-35
Tchetgen Tchetgen, Eric J (2014) A general regression framework for a secondary outcome in case-control studies. Biostatistics 15:117-28
Tchetgen Tchetgen, Eric J (2014) Identification and estimation of survivor average causal effects. Stat Med 33:3601-28
Tchetgen Tchetgen, Eric J (2014) A Note on formulae for causal mediation analysis in an odds ratiocontext. Epidemiol Method 2:21-31

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