The proposed work involves the development of new ammo-protecting groups and new coupling reagents for use in the synthesis of biologically active materials such as Pharmaceuticals, polynucleotides, including PNA's^ peptides, and small proteins. For ease of operation following the deblocking procedure, emphasis is placed on amino-protecting groups leading to (a) volatile, (b) infinitely water-soluble, or (c) easily-extracted by-products. Especially important arje groups cleaved by mild organic bases or relatively non-basic nucleophiles under non-hydrolytic conditions. A large new class of protecting groups subject to deblocking under conditions of Michael addition typified by the Bsmoc function, will be studied in detail in terms of applicability to the synthesis of long-chain peptides or small proteins. The Bsmoc group will be examined for its application to (a) superfast solid phase syntheses of longer peptides, and (b) peptides subject to base-catalyzed side reactions and (c) """"""""difficult"""""""" peptides subject to aggregation effects. Further studies on two new peptide-bond protecting groups, the Dcpm- and Depp functions, will probe applicability to problems of peptide insolubility and aggregation. Further optimization of new coupling systems based on 7-aza-l-hydroxybenzotriazole will be carried out, especially in the cases of HOAt-N-oxide, the corresponding pyrazines, phosphorus- based OAt esters, HODhat derivatives and immonium-stylesystems. Mechanistic studies on the operation of these new coupling reagents will point the way to greater coupling efficiency and speed. Comparison of solid phase syntheses for longer peptideswill be carried out by automated techniques on an ABI 433A synthesizer and a CEM microwave synthesizer. Microwave irradiation is expected to allow for the most efficient syntheses, especially with Bsmoc and HOAt-based chemistry.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM009706-41
Application #
7338364
Study Section
Synthetic and Biological Chemistry B Study Section (SBCB)
Program Officer
Schwab, John M
Project Start
1976-06-01
Project End
2009-12-31
Budget Start
2008-01-01
Budget End
2008-12-31
Support Year
41
Fiscal Year
2008
Total Cost
$260,753
Indirect Cost
Name
University of Massachusetts Amherst
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
153926712
City
Amherst
State
MA
Country
United States
Zip Code
01003
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Carpino, Louis A; Abdel-Maksoud, Adel Ali; Mansour, E M E et al. (2007) Segment Coupling to a Highly Hindered N-Terminal, Alamethicin-Related alpha-Aminoisobutyric Acid (Aib) Residue. Tetrahedron Lett 48:7404-7407
Carpino, Louis A; Abdel-Maksoud, Adel Ali; Ionescu, Dumitru et al. (2007) 1,1-dioxonaphtho[1,2-b]thiophene-2-methyloxycarbonyl (alpha-Nsmoc) and 3,3-dioxonaphtho[2,1-b]thiophene-2-methyloxycarbonyl (beta-Nsmoc) amino-protecting groups. J Org Chem 72:1729-36
McGinniss, M J; Kazazian Jr, H H; Stetten, G et al. (1992) Mechanisms of ring chromosome formation in 11 cases of human ring chromosome 21. Am J Hum Genet 50:15-28