In the broadest sense, Dr. Feher's objective is to understand biological processes and phenomena in terms of physical mechanisms; i.e., on a molecular level. The main problem addressed in this proposal deals with the conversion of electromagnetic energy into chemical energy; i.e., photosynthesis. This is one of the most basic processes in biology; all energy of the living world is derived from it. At the heart of the photosynthetic process is a membrane bound protein-pigment complex called the reaction center (RC). Dr. Feher studies the structure and function of the RC and the secondary donor, cytochrome c2. The mechanisms of electron and proton transfers that take place in the RC are of general interest and importance in all living systems. For instance, the processes that occur in mitochondria (e.g. in mammalian cells) can be viewed as the reverse process of photosynthesis utilizing similar mechanisms. Furthermore, the RC, being the best characterized membrane bound protein, serves as an excellent model for other membrane proteins that perform important functions in a variety of biochemical processes. The necessity of having single crystals to determine structures led Dr. Feher to a basic investigation of the crystallization mechanisms of macromolecules. Crystallization, in addition to being of great practical importance, serves as an example of molecular association (recognition); a ubiquitous phenomenon throughout the living world. The fields and methodologies involved in this work are interdisciplinary, ranging from physics to chemistry and molecular biology. The techniques used are: X-ray crystallography, electron and atomic force microscopy, optical and magnetic (EPR/ENDOR) spectroscopy, computational (e.g. Monte Carlo simulations), protein chemistry and recombinant DNA techniques. The specific problems addressed are: The three-dimensional structure of native and mutant RCs from the photosynthetic bacterium Rb. sphaeroides, the structures of cytochrome c2, the RC-cyt c2 complex, the RC from photosystem II of green plants; electron transfers in RCs, calculation of electrostatic energies in RCs and the mechanism of crystallization of biological macromolecules.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM013191-34
Application #
2734324
Study Section
Special Emphasis Panel (ZRG3-BBCA (01))
Project Start
1976-05-10
Project End
2000-06-30
Budget Start
1998-07-01
Budget End
1999-06-30
Support Year
34
Fiscal Year
1998
Total Cost
Indirect Cost
Name
University of California San Diego
Department
Physics
Type
Schools of Arts and Sciences
DUNS #
077758407
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Chirino, A J; Lous, E J; Huber, M et al. (1994) Crystallographic analyses of site-directed mutants of the photosynthetic reaction center from Rhodobacter sphaeroides. Biochemistry 33:4584-93
Paddock, M L; Rongey, S H; McPherson, P H et al. (1994) Pathway of proton transfer in bacterial reaction centers: role of aspartate-L213 in proton transfers associated with reduction of quinoneto dihydroquinone. Biochemistry 33:734-45
McPherson, P H; Schonfeld, M; Paddock, M L et al. (1994) Protonation and free energy changes associated with formation of QBH2 in native and Glu-L212-->Gln mutant reaction centers from Rhodobacter sphaeroides. Biochemistry 33:1181-93
Rongey, S H; Paddock, M L; Feher, G et al. (1993) Pathway of proton transfer in bacterial reaction centers: second-site mutation Asn-M44-->Asp restores electron and proton transfer in reaction centers from the photosynthetically deficient Asp-L213-->Asn mutant of Rhodobacter sphaeroides. Proc Natl Acad Sci U S A 90:1325-9
McPherson, P H; Okamura, M Y; Feher, G (1993) Light-induced proton uptake by photosynthetic reaction centers from Rhodobacter sphaeroides R-26.1. II. Protonation of the state DQAQB2-. Biochim Biophys Acta 1144:309-24
Beroza, P; Fredkin, D R; Okamura, M Y et al. (1991) Protonation of interacting residues in a protein by a Monte Carlo method: application to lysozyme and the photosynthetic reaction center of Rhodobacter sphaeroides. Proc Natl Acad Sci U S A 88:5804-8
Durbin, S D; Feher, G (1990) Studies of crystal growth mechanisms of proteins by electron microscopy. J Mol Biol 212:763-74
Calvo, R; Passeggi, M C; Isaacson, R A et al. (1990) Electron paramagnetic resonance investigation of photosynthetic reaction centers from Rhodobacter sphaeroides R-26 in which Fe2+ was replaced by Cu2+. Determination of hyperfine interactions and exchange and dipole-dipole interactions between Cu2+ and QA- Biophys J 58:149-65
Lubitz, W; Isaacson, R A; Okamura, M Y et al. (1989) ENDOR studies of the intermediate electron acceptor radical anion I-. in Photosystem II reaction centers. Biochim Biophys Acta 977:227-32
Allen, J P; Feher, G; Yeates, T O et al. (1988) Structure of the reaction center from Rhodobacter sphaeroides R-26: protein-cofactor (quinones and Fe2+) interactions. Proc Natl Acad Sci U S A 85:8487-91

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