The three-dimensional structure of the lysozyme from bacteriophage T4 has been determined by X-ray crystallography from a 2.4 A resolution electron density map. Also an extensive library of mutant enzymes is available, and techniques for obtaining additional mutants have been established. A number of mutant lysozymes have been crystallized isomorphously with the native protein. We propose to compare in detail by X-ray crystallography, nuclear magnetic resonance, and various optical methods the three-dimensional structures, the stability, the folding, and the activity of selected mutant enzymes with that of the wild type enzyme. In so doing we expect to obtain detailed information, not previously accessible, concerning the factors influencing the stability and activity of T4 phage lysozyme, and, by inference, of proteins in general. We also propose to compare, insofar as possible, the structure and activity of T4 phage lysozyme with that of hen egg-white lysozyme. The structure of Embden Goose lysozyme, which is not homologous with phage lysozyme or hen egg-white lysozyme, will be determined and compared with other known lysozyme structures in order to determine the evolutionary relation between these molecules.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM021967-11
Application #
3270843
Study Section
Biophysics and Biophysical Chemistry B Study Section (BBCB)
Project Start
1978-06-01
Project End
1986-05-31
Budget Start
1985-06-01
Budget End
1986-05-31
Support Year
11
Fiscal Year
1985
Total Cost
Indirect Cost
Name
University of Oregon
Department
Type
Graduate Schools
DUNS #
948117312
City
Eugene
State
OR
Country
United States
Zip Code
97403
Baase, Walter A; Liu, Lijun; Tronrud, Dale E et al. (2010) Lessons from the lysozyme of phage T4. Protein Sci 19:631-41
Liu, Lijun; Marwitz, Adam J V; Matthews, Brian W et al. (2009) Boron mimetics: 1,2-dihydro-1,2-azaborines bind inside a nonpolar cavity of T4 lysozyme. Angew Chem Int Ed Engl 48:6817-9
Mooers, Blaine H M; Tronrud, Dale E; Matthews, Brian W (2009) Evaluation at atomic resolution of the role of strain in destabilizing the temperature-sensitive T4 lysozyme mutant Arg 96 --> His. Protein Sci 18:863-70
Liu, Lijun; Baase, Walter A; Matthews, Brian W (2009) Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding. J Mol Biol 385:595-605
Liu, Lijun; Baase, Walter A; Michael, Miya M et al. (2009) Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry 48:8842-51
Matthews, Brian W; Liu, Lijun (2009) A review about nothing: are apolar cavities in proteins really empty? Protein Sci 18:494-502
Mooers, Blaine H M; Baase, Walter A; Wray, Jonathan W et al. (2009) Contributions of all 20 amino acids at site 96 to the stability and structure of T4 lysozyme. Protein Sci 18:871-80
Liu, Lijun; Quillin, Michael L; Matthews, Brian W (2008) Use of experimental crystallographic phases to examine the hydration of polar and nonpolar cavities in T4 lysozyme. Proc Natl Acad Sci U S A 105:14406-11
Collins, Marcus D; Quillin, Michael L; Hummer, Gerhard et al. (2007) Structural rigidity of a large cavity-containing protein revealed by high-pressure crystallography. J Mol Biol 367:752-63
Quillin, Michael L; Wingfield, Paul T; Matthews, Brian W (2006) Determination of solvent content in cavities in IL-1beta using experimentally phased electron density. Proc Natl Acad Sci U S A 103:19749-53

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