Polyketides are widely used in human and veterinary medicine as antibiotic, immunosuppressant, antitumor, antifungal, and antiparasitic agents, the discovery of new members of this class and understanding how these compounds are biosynthesized is of paramount importance. Besides the practical value of such studies, the study of polyketide synthase enzymology is also of fundamental significance. Indeed, modular polyketide synthases are among the largest and most complex biological catalysts that are known. Using a small suite of biochemical reactions that are repeated in a tightly programmed manner, these synthases carry out the non-templated, assembly line synthesis of some of the most structurally and stereochemically complex natural products. The unusual size (2-5 MDa) of these multifunctional synthases and the fact that all of their intermediates remain covalently tethered to the acyl carrier protein components throughout the entire reaction cycle makes the study of these extraordinary enzymes especially challenging and scientifically rewarding. The proposed studies will lead to fundamental new biological insights into the central issue of modern molecular biochemistry, the relationship between protein sequence, structure, and function. During the next project period, we will continue to investigate the mechanistic enzymology and molecular genetics of complex polyketide natural product biosynthesis. We will use a combination of chemical, enzymological, protein engineering, and protein structural approaches to elucidate the individual mechanisms and the molecular basis for the programming of the multistep, enzyme-catalyzed transformations that lead to the formation of complex polyketides, including the macrolide antibiotics erythromycin, methymycin, picromycin, tylosin, and rifamycin, the polyene antifungal agent nystatin, the protein phosphatase 2A inhibitor fostriecin, and the polyether nanchangmycin. The core experimental approach will be based on the expression and characterization of individual PKS domains and modules and the use of these recombinant proteins, alone or in combination, to establish the intimate biochemical details of reaction mechanism and protein-protein recognition in polyketide biosynthesis. Special emphasis will be placed on 1) understanding the mechanism, substrate specificity, and stereochemistry of the reduction reactions catalyzed by ketoreductase (KR) domains;2) confirming the recently demonstrated role of specific KR domains in the epimerization of methyl groups during the formation of reduced polyketides and identifying the source of epimerization of unreduced polyketide intermediates;3) understanding the mechanism, substrate specificity, and stereochemistry of the dehydration reactions catalyzed by dehydratase (DH) domains, both alone and in intact modules;and 4) elucidating the complex relationships between PKS structure and function.

Public Health Relevance

Polyketides are widely used in human and veterinary medicine as antibiotic, immunosuppressant, antitumor, antifungal, and antiparasitic agents. The discovery of new members of this class and understanding how these compounds are biosynthesized is of paramount importance. Besides the practical value of such studies, the study of polyketide synthase enzymology is also of fundamental significance. Indeed, modular polyketide synthases are among the largest and most complex biological catalysts that are known. Using a small suite of biochemical reactions that are repeated in a tightly programmed manner, these synthases carry out the non-templated, assembly line synthesis of some of the most structurally and stereochemically complex natural products. The unusual size (2-5 MDa) of these multifunctional synthases and the fact that all of their intermediates remain covalently tethered to the acyl carrier protein components throughout the entire reaction cycle makes the study of these extraordinary enzymes especially challenging and scientifically rewarding. Finally, the proposed studies will lead to fundamental new biological insights into the central issue of modern molecular biochemistry, the relationship between protein sequence, structure, and function.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM022172-38
Application #
8514619
Study Section
Synthetic and Biological Chemistry B Study Section (SBCB)
Program Officer
Gerratana, Barbara
Project Start
1977-08-01
Project End
2014-07-31
Budget Start
2013-08-01
Budget End
2014-07-31
Support Year
38
Fiscal Year
2013
Total Cost
$343,528
Indirect Cost
$121,409
Name
Brown University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
001785542
City
Providence
State
RI
Country
United States
Zip Code
02912
Khosla, Chaitan; Herschlag, Daniel; Cane, David E et al. (2014) Assembly line polyketide synthases: mechanistic insights and unsolved problems. Biochemistry 53:2875-83
Dunn, Briana J; Watts, Katharine R; Robbins, Thomas et al. (2014) Comparative analysis of the substrate specificity of trans- versus cis-acyltransferases of assembly line polyketide synthases. Biochemistry 53:3796-806
Garg, Ashish; Xie, Xinqiang; Keatinge-Clay, Adrian et al. (2014) Elucidation of the cryptic epimerase activity of redox-inactive ketoreductase domains from modular polyketide synthases by tandem equilibrium isotope exchange. J Am Chem Soc 136:10190-3
You, Young-Ok; Khosla, Chaitan; Cane, David E (2013) Stereochemistry of reductions catalyzed by methyl-epimerizing ketoreductase domains of polyketide synthases. J Am Chem Soc 135:7406-9
Gay, Darren; You, Young-Ok; Keatinge-Clay, Adrian et al. (2013) Structure and stereospecificity of the dehydratase domain from the terminal module of the rifamycin polyketide synthase. Biochemistry 52:8916-28
Dunn, Briana J; Cane, David E; Khosla, Chaitan (2013) Mechanism and specificity of an acyltransferase domain from a modular polyketide synthase. Biochemistry 52:1839-41
Garg, Ashish; Khosla, Chaitan; Cane, David E (2013) Coupled methyl group epimerization and reduction by polyketide synthase ketoreductase domains. Ketoreductase-catalyzed equilibrium isotope exchange. J Am Chem Soc 135:16324-7
Lowry, Brian; Robbins, Thomas; Weng, Chih-Hisang et al. (2013) In vitro reconstitution and analysis of the 6-deoxyerythronolide B synthase. J Am Chem Soc 135:16809-12
Kapur, Shiven; Lowry, Brian; Yuzawa, Satoshi et al. (2012) Reprogramming a module of the 6-deoxyerythronolide B synthase for iterative chain elongation. Proc Natl Acad Sci U S A 109:4110-5
Yuzawa, Satoshi; Kapur, Shiven; Cane, David E et al. (2012) Role of a conserved arginine residue in linkers between the ketosynthase and acyltransferase domains of multimodular polyketide synthases. Biochemistry 51:3708-10

Showing the most recent 10 out of 90 publications