The research proposed in the following grant application is aimed at establishing novel spectroscopic techniques to probe solution structures of molecules of biological interest. The spectroscopic method to be exploited is Vibrational Optical Activity (VOA), a relatively recently discovered technique of spectroscopy, which combines principles of vibrational spectroscopy and optical activity. Instrumentation for the observation of both experimental approaches to VOA, infrared Vibrational Circular Dichroism (VCD) and Raman Optical Activity (ROA), has been constructed in the applicant's laboratory during the last grant period. Unexpected difficulties with the ROA instrumentation have been overcome and ROA data are now available routinely. The spectroscopic efforts have centered, and will continue to center, around small molecules which model molecules of biological interest, and other systems designed such that the origin of VOA may be understood in terms of a detailed vibrational analysis. Consequently, efforts to synthesize and resolve small chiral species will be expanded. VOA data on these molecules will be obtained and interpreted in terms of model calculations, which are presently underway. Models of biological molecules, such as peptide fragments and small nucleotide polymers, will be synthesized such that conformational sensitivity of VOA may be established. In order to determine the identity of certain vibrations, the syntheses may involve the incorporation of specific probes the vibrations of which may be observed easily. Thus, the proposed research represents an integrated approach, involving instrument development, spectroscopic, synthetic and theoretical efforts, to augment presently available techniques to deduce solution conformation of biomolecules.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM028619-07A1
Application #
3275855
Study Section
Biophysics and Biophysical Chemistry A Study Section (BBCA)
Project Start
1982-02-01
Project End
1994-03-31
Budget Start
1989-04-01
Budget End
1990-03-31
Support Year
7
Fiscal Year
1989
Total Cost
Indirect Cost
Name
Hunter College
Department
Type
Schools of Arts and Sciences
DUNS #
City
New York
State
NY
Country
United States
Zip Code
10065
Birke, S S; Diem, M (1995) Conformational studies of the smallest structural motifs of DNA detectable via vibrational circular dichroism: cytidylyl-(3'-5')-guanosine and guanylyl-(3'-5')-cytidine. Biophys J 68:1045-9
Xie, P; Zhou, Q; Diem, M (1994) IR circular dichroism of turns in small peptides. Faraday Discuss :233-43
Xiang, T; Goss, D J; Diem, M (1993) Strategies for the computation of infrared CD and absorption spectra of biological molecules: ribonucleic acids. Biophys J 65:1255-61
Birke, S S; Moses, M; Kagalovsky, B et al. (1993) Infrared CD of deoxy oligonucleotides. Conformational studies of 5'd(GCGC)3', 5'd(CGCG)3', 5'd(CCGG)3', and 5'd(GGCC)3' in low and high salt aqueous solution. Biophys J 65:1262-71
Birke, S S; Agbaje, I; Diem, M (1992) Experimental and computational infrared CD studies of prototypical peptide conformations. Biochemistry 31:450-5
Wyssbrod, H R; Diem, M (1992) IR (vibrational) CD of peptide beta-turns: a theoretical and experimental study of cyclo-(-Gly-Pro-Gly-D-Ala-Pro-). Biopolymers 32:1237-42
Zhong, W X; Gulotta, M; Goss, D J et al. (1990) DNA solution conformation via infrared circular dichroism: experimental and theoretical results for B-family polymers. Biochemistry 29:7485-91
Gulotta, M; Goss, D J; Diem, M (1989) IR vibrational CD in model deoxyoligonucleotides: observation of the B----Z phase transition and extended coupled oscillator intensity calculations. Biopolymers 28:2047-58
Lee, O; Roberts, G M; Diem, M (1989) IR vibrational CD in alanyl tripeptide: indication of a stable solution conformer. Biopolymers 28:1759-70