Macromolecular structures of high complexity are being studied using a high resolution electron microscope with tilt/rotation capability and novel methods of image analysis. These methods allow reproducible structural information to be extracted from images of non crystalline specimens. Images of single molecules in characteristic views are aligned, objectively sorted by multivariate classification and averaged to yield statistically significant projections. (i) The three-dimensional structure of two ribosomal particles (50S subunit and 70S monosome) will be reconstructed from projections so obtained. The 3-D model of the 30S subunit already reconstructed will be further refined. The use of unstained frozen, hydrated specimen and low dose techniques will be explored to maximize the information yield. (ii) The method of localizing ligands with high accuracy (10A) will be further developed on ribosomes (t-RNA-30S complex and antibody labeling) and hemocyanins. Specifically, this method will be used to map the location of constituent proteins relative to the 3-D models of the 30S ribosomal subunit and the 48-mer of Limulus polyphemus hemocyanin. (iii) Independently reconstructed 30S, 50S, and 70S ribosomal particles will be reconciled by computer fitting to obtain a precise model for the relative arrangement of the large and small subunit in the ribosome. (iv) Inter- and intra-kingdom comparisons of the small subunit will be made by averaging images showing the particle in equivalent views.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM029169-04
Application #
3276676
Study Section
Biophysics and Biophysical Chemistry B Study Section (BBCB)
Project Start
1982-04-01
Project End
1988-03-31
Budget Start
1985-04-01
Budget End
1986-03-31
Support Year
4
Fiscal Year
1985
Total Cost
Indirect Cost
Name
New York State Department of Health
Department
Type
DUNS #
002436061
City
Menands
State
NY
Country
United States
Zip Code
12204
Wang, Jimin; Liu, Zheng; Crabtree, Robert H et al. (2018) On the damage done to the structure of the Thermoplasma acidophilum proteasome by electron radiation. Protein Sci 27:2051-2061
Wang, Jimin; Liu, Zheng; Frank, Joachim et al. (2018) Identification of ions in experimental electrostatic potential maps. IUCrJ 5:375-381
Frank, Joachim (2018) New Opportunities Created by Single-Particle Cryo-EM: The Mapping of Conformational Space. Biochemistry 57:888
Santulli, Gaetano; Lewis, Daniel; des Georges, Amedee et al. (2018) Ryanodine Receptor Structure and Function in Health and Disease. Subcell Biochem 87:329-352
Hashem, Yaser; Frank, Joachim (2018) The Jigsaw Puzzle of mRNA Translation Initiation in Eukaryotes: A Decade of Structures Unraveling the Mechanics of the Process. Annu Rev Biophys :
Siegmund, Stephanie E; Grassucci, Robert; Carter, Stephen D et al. (2018) Three-Dimensional Analysis of Mitochondrial Crista Ultrastructure in a Patient with Leigh Syndrome by In Situ Cryoelectron Tomography. iScience 6:83-91
Qiu, Weihua; Fu, Ziao; Xu, Guoyan G et al. (2018) Structure and activity of lipid bilayer within a membrane-protein transporter. Proc Natl Acad Sci U S A 115:12985-12990
Twomey, Edward C; Yelshanskaya, Maria V; Grassucci, Robert A et al. (2017) Structural Bases of Desensitization in AMPA Receptor-Auxiliary Subunit Complexes. Neuron 94:569-580.e5
Frank, Joachim (2017) Time-resolved cryo-electron microscopy: Recent progress. J Struct Biol 200:303-306
Frank, Joachim (2017) The mechanism of translation. F1000Res 6:198

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