Although mitochondrial DNA (mtDNA) encodes only 13 proteins, these are vital for survival. MtDNA replication and transcription depend entirely on the coordinated synthesis of nuclear gene products, including mitochondrial DNA polymerase (DNA pol (y), RNA polymerase and a set of essential factors. MtDNA accumulates to high levels in mammalian oocytes and this is even more pronounced in amphibian oocytes, where one cell contains as much mtDNA as 100,000 somatic cells. The African frog, Xenopus laevis, provides a model system in which to study the regulation of replication and transcription of mtDNA. This system offers the opportunity to study factors that control mtDNA replication, since replication occurs at high rates in immature oocytes and is inactive in early embryos. We propose to study the biosynthesis of two important proteins in mtDNA replication. One of these is DNA (y), which is also of interest because it is a target for toxicity of several anticancer and antiviral drugs. The second is the HMG-box transcription factor, mtTFA, that also serves as an abundant DNA binding protein in mitochondria. MtTFA is of special interest since its abundance varies in direct proportion to that of mtDNA in human patients with tissue-specific depletion of mtDNA, which is typically a fatal genetic disease. We propose to determine whether the abundance of mtTFA and DNA pol (y) is proportional to the rate of mtDNA synthesis and to use microinjection techniques to determine the effects on mtDNA replication of manipulating the quantity of either protein in oocytes. We will also perform functional studies to identify important sequences in the promoters for these genes in both oocytes and somatic cells to determine whether there are tissue-specific factors that augment the expression of these genes in oocytes.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM029681-17
Application #
2900551
Study Section
Physiological Chemistry Study Section (PC)
Project Start
1981-07-01
Project End
2001-03-31
Budget Start
1999-04-01
Budget End
2000-03-31
Support Year
17
Fiscal Year
1999
Total Cost
Indirect Cost
Name
State University New York Stony Brook
Department
Pharmacology
Type
Schools of Medicine
DUNS #
804878247
City
Stony Brook
State
NY
Country
United States
Zip Code
11794
Bogenhagen, Daniel F (2009) Biochemical isolation of mtDNA nucleoids from animal cells. Methods Mol Biol 554:3-14
Liu, Pingfang; Qian, Limin; Sung, Jung-Suk et al. (2008) Removal of oxidative DNA damage via FEN1-dependent long-patch base excision repair in human cell mitochondria. Mol Cell Biol 28:4975-87
Yakubovskaya, Elena; Lukin, Mark; Chen, Zhixin et al. (2007) The EM structure of human DNA polymerase gamma reveals a localized contact between the catalytic and accessory subunits. EMBO J 26:4283-91
Wang, Yousong; Bogenhagen, Daniel F (2006) Human mitochondrial DNA nucleoids are linked to protein folding machinery and metabolic enzymes at the mitochondrial inner membrane. J Biol Chem 281:25791-802
Yakubovskaya, Elena; Chen, Zhixin; Carrodeguas, Jose A et al. (2006) Functional human mitochondrial DNA polymerase gamma forms a heterotrimer. J Biol Chem 281:374-82
Bogenhagen, Daniel F; Wang, Yousong; Shen, Ellen L et al. (2003) Protein components of mitochondrial DNA nucleoids in higher eukaryotes. Mol Cell Proteomics 2:1205-16
Bogenhagen, Daniel F (2002) Purification of mitochondria for enzymes involved in nucleic acid transactions. Methods Mol Biol 197:199-210
Perez-Jannotti, R M; Klein, S M; Bogenhagen, D F (2001) Two forms of mitochondrial DNA ligase III are produced in Xenopus laevis oocytes. J Biol Chem 276:48978-87
Carrodeguas, J A; Theis, K; Bogenhagen, D F et al. (2001) Crystal structure and deletion analysis show that the accessory subunit of mammalian DNA polymerase gamma, Pol gamma B, functions as a homodimer. Mol Cell 7:43-54
Shen, E L; Bogenhagen, D F (2001) Developmentally-regulated packaging of mitochondrial DNA by the HMG-box protein mtTFA during Xenopus oogenesis. Nucleic Acids Res 29:2822-8

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