The objectives of the project are to gain a better understanding of the mechanisms of enzymatic catalysis and of the means by which inorganic cations contribute to the catalytic processes. Pyruvate kinase and enolase, enzymes from the glycolytic pathway, are of central importance to carbohydrate metabolism in all living organisms. Both enzymes require specific activation by two equivalents of divalent cation, and pyruvate kinase requires activation by potassium as well. Each enzyme exhibits one or more instances of general acid-base catalysis during the catalytic cycle. The roles of magnesium and other divalent cations in enzymatic catalysis are poorly understood. General acid-base catalysis is a topic of current interest in enzymology. Studies of enolase and pyruvate kinase hold promise for revealing fundamental concepts in these areas.
The specific aims of the project focus on key aspects of activation by metal ions and of general acid-base catalysis that have been revealed in previous studies. X-ray crystallography, site-directed mutagenesis, spectroscopic, and kinetic methods are proposed to approach the specific aims which include experiments to: 1) determine the pKa's of the general acid-base catalysts in the active site of enolase; 2) probe the basis for metal specificity in the steps of enolase catalysis; 3) correlate structure and function of wild type and site specific mutant enolases; 4) search for the group or groups responsible for general acid-base catalysis and for a potential proton relay network in the active site of pyruvate kinase ; 5) probe the structural outcome of a Glu to Lys mutation in pyruvate kinase that eliminates the requirement for activation by potassium and probe the structural changes induced by an allosteric effector.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM035752-15
Application #
6138396
Study Section
Physical Biochemistry Study Section (PB)
Program Officer
Ikeda, Richard A
Project Start
1986-01-01
Project End
2002-12-31
Budget Start
2000-01-01
Budget End
2000-12-31
Support Year
15
Fiscal Year
2000
Total Cost
$284,665
Indirect Cost
Name
University of Wisconsin Madison
Department
Biochemistry
Type
Schools of Earth Sciences/Natur
DUNS #
161202122
City
Madison
State
WI
Country
United States
Zip Code
53715
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Mansoorabadi, Steven O; Padmakumar, Rugmini; Fazliddinova, Nisso et al. (2005) Characterization of a succinyl-CoA radical-cob(II)alamin spin triplet intermediate in the reaction catalyzed by adenosylcobalamin-dependent methylmalonyl-CoA mutase. Biochemistry 44:3153-8
Reed, George H; Mansoorabadi, Steven O (2003) The positions of radical intermediates in the active sites of adenosylcobalamin-dependent enzymes. Curr Opin Struct Biol 13:716-21
Sims, Paul A; Larsen, Todd M; Poyner, Russell R et al. (2003) Reverse protonation is the key to general acid-base catalysis in enolase. Biochemistry 42:8298-306
Poyner, Russell R; Larsen, Todd M; Wong, Se-Wei et al. (2002) Functional and structural changes due to a serine to alanine mutation in the active-site flap of enolase. Arch Biochem Biophys 401:155-63
Frey, Perry A; Chang, Christopher H; Ballinger, Marcus D et al. (2002) Kinetic characterization of transient free radical intermediates in reaction of lysine 2,3-aminomutase by EPR lineshape analysis. Methods Enzymol 354:426-35

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