Non-heme iron (NHFe) enzymes are ubiquitous in nature and function in DNA repair, hypoxia regulation, antibiotic and natural product biosynthesis, and bioremediation, and include the anticancer drug bleomycin (BLM). On a molecular level, depending on the enzyme, the Fe II site activates dioxygen for electrophilic aromatic substitution (EAS), mono- and dioxygenation, H-atom abstraction (HAA), hydroxylation, halogenation, desaturation, and ring closure, expansion, and cleavage. They are broadly divided into 6 classes: the a- ketoglutarate (aKG) dependent enzymes, the pterin dependent enzymes, the Rieske dioxygenases, the extradiol dioxygenases, cofactor independent NHFe enzymes that act on redox inactive substrates, and BLM. These had been generally difficult to study due to their limited spectral features; in particular, they lack intene absorption features and have integer spin ground states that often cannot be studied by EPR. In comparison, heme enzymes do have intense absorption features due to the pp* transitions of the porphyrin ligand; however, these obscure the features associated directly with the Fe center and its activation of O2. This research program is directed toward developing new spectroscopic methods to elucidate the NHFe active sites, their interactions with cosubstrates, and the nature of their oxygen intermediates. New techniques are also being developed to spectroscopically access the iron in the highly covalent heme environment. Coupled to electronic structure calculations, these studies define the molecular mechanisms of the different classes of NHFe enzymes to elucidate general strategies in O2 activation. Effort is also directed toward experimentally determining how the highly delocalized porphyrin environment in heme enzymes impacts O2 activation relative to the NHFe enzymes. Ultimately, these studies will define how structurally similar NHFe sites control a wide range of reactivities and will provide fundamental insight into geometric and electronic structure contributions to determining differences in function.

Public Health Relevance

Non-heme iron enzymes are involved in antibiotic1-6, collagen7, natural product8-10, and neurotransmitter11,12 biosynthesis, obesity regulation13, bioremediation14-16, and reactivities related to cancer treatment (hypoxia regulation17, DNA repair18 and cleavage19-21), and their mutations are responsible for a range of genetic diseases22-27 (phenylketonuria, ethylmalonic encephalopathy, etc.). This research program provides definitive insight into non-heme iron reactivity and the factors that influence this for understanding diseases on a molecular level and to aid in the development of new drugs.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM040392-29
Application #
9041597
Study Section
Special Emphasis Panel (ZRG1)
Program Officer
Anderson, Vernon
Project Start
1988-07-01
Project End
2019-04-30
Budget Start
2016-05-01
Budget End
2017-04-30
Support Year
29
Fiscal Year
2016
Total Cost
Indirect Cost
Name
Stanford University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
009214214
City
Stanford
State
CA
Country
United States
Zip Code
94304
Iyer, Shyam R; Chaplin, Vanessa D; Knapp, Michael J et al. (2018) O2 Activation by Nonheme FeII ?-Ketoglutarate-Dependent Enzyme Variants: Elucidating the Role of the Facial Triad Carboxylate in FIH. J Am Chem Soc 140:11777-11783
Sutherlin, Kyle D; Wasada-Tsutsui, Yuko; Mbughuni, Michael M et al. (2018) Nuclear Resonance Vibrational Spectroscopy Definition of O2 Intermediates in an Extradiol Dioxygenase: Correlation to Crystallography and Reactivity. J Am Chem Soc :
Goudarzi, Serra; Babicz Jr, Jeffrey T; Kabil, Omer et al. (2018) Spectroscopic and Electronic Structure Study of ETHE1: Elucidating the Factors Influencing Sulfur Oxidation and Oxygenation in Mononuclear Nonheme Iron Enzymes. J Am Chem Soc 140:14887-14902
Jeong, Donghyun; Yan, James J; Noh, Hyeonju et al. (2018) Oxidation of Naphthalene with a Manganese(IV) Bis(hydroxo) Complex in the Presence of Acid. Angew Chem Int Ed Engl 57:7764-7768
Sutherlin, Kyle D; Rivard, Brent S; Böttger, Lars H et al. (2018) NRVS Studies of the Peroxide Shunt Intermediate in a Rieske Dioxygenase and Its Relation to the Native FeII O2 Reaction. J Am Chem Soc 140:5544-5559
Srnec, Martin; Solomon, Edward I (2017) Frontier Molecular Orbital Contributions to Chlorination versus Hydroxylation Selectivity in the Non-Heme Iron Halogenase SyrB2. J Am Chem Soc 139:2396-2407
Mara, Michael W; Hadt, Ryan G; Reinhard, Marco Eli et al. (2017) Metalloprotein entatic control of ligand-metal bonds quantified by ultrafast x-ray spectroscopy. Science 356:1276-1280
Kjær, Kasper S; Zhang, Wenkai; Alonso-Mori, Roberto et al. (2017) Ligand manipulation of charge transfer excited state relaxation and spin crossover in [Fe(2,2'-bipyridine)2(CN)2]. Struct Dyn 4:044030
Titus, Charles J; Baker, Michael L; Lee, Sang Jun et al. (2017) L-edge spectroscopy of dilute, radiation-sensitive systems using a transition-edge-sensor array. J Chem Phys 147:214201
Sharma, Savita K; Schaefer, Andrew W; Lim, Hyeongtaek et al. (2017) A Six-Coordinate Peroxynitrite Low-Spin Iron(III) Porphyrinate Complex-The Product of the Reaction of Nitrogen Monoxide (·NO(g)) with a Ferric-Superoxide Species. J Am Chem Soc 139:17421-17430

Showing the most recent 10 out of 69 publications