The overall objective of the research proposed in this grant is to elucidate the biochemical and regulatory mechanisms of a eukaryotic transposable element in a higher metazoan using an integrated approach that combines biochemistry, genetics and molecular biology. Our efforts will focus on understanding the biochemical mechanism of P element transposition and the mechanisms by which these eukaryotic DNA rearrangement reactions are regulated in the fruit fly, Drosophila melanogaster. We will also investigate the role of the Drosophila Ku and DNA-dependent protein kinase subunits in DNA repair and P element transposition. These studies will provide necessary information for the development of P elements as genetic tools in other organisms as well as provide insights into metazoan DNA repair mechanisms. In order to accomplish our overall objective, we will: 1. Analyze the phenotypes of mutant P element transposase proteins using an in vivo excision assay. 2. Express and purify wild type and mutant transposase proteins using mammalian vaccinia virus vectors. 3. Analyze the biochemical properties of purified recombinant transposase protein; further develop biochemical assays for its activities. 4. Analyze the properties of the 66kD and KP repressor proteins in vitro using purified recombinant E. coli proteins. 5. Identify other proteins that interact with the 66kD P element repressor protein and explore their role in P cytotype repression. 6. Analyze the role of the Drosophila proteins IRBP(Dmku70), DmKu80 and DmDNA-PK(p450) in P element transposition. 7. Develop P element-mediated transposition as a genetic tool in other organisms.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM048862-08
Application #
6018944
Study Section
Special Emphasis Panel (ZRG2-CTY (02))
Project Start
1992-07-01
Project End
2000-06-30
Budget Start
1999-07-01
Budget End
2000-06-30
Support Year
8
Fiscal Year
1999
Total Cost
Indirect Cost
Name
University of California Berkeley
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
094878337
City
Berkeley
State
CA
Country
United States
Zip Code
94704
Francis, Malik Joseph; Roche, Siobhan; Cho, Michael Jeffrey et al. (2016) Drosophila IRBP bZIP heterodimer binds P-element DNA and affects hybrid dysgenesis. Proc Natl Acad Sci U S A 113:13003-13008
Majumdar, Sharmistha; Rio, Donald C (2015) P Transposable Elements in Drosophila and other Eukaryotic Organisms. Microbiol Spectr 3:MDNA3-0004-2014
Majumdar, Sharmistha; Singh, Anita; Rio, Donald C (2013) The human THAP9 gene encodes an active P-element DNA transposase. Science 339:446-8
Sabogal, Alex; Lyubimov, Artem Y; Corn, Jacob E et al. (2010) THAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves. Nat Struct Mol Biol 17:117-23
Huang, Shirley H; Rio, Donald C; Marletta, Michael A (2007) Ligand binding and inhibition of an oxygen-sensitive soluble guanylate cyclase, Gyc-88E, from Drosophila. Biochemistry 46:15115-22
Weinert, Brian T; Rio, Donald C (2007) DNA strand displacement, strand annealing and strand swapping by the Drosophila Bloom's syndrome helicase. Nucleic Acids Res 35:1367-76
Remus, Dirk; Blanchette, Marco; Rio, Donald C et al. (2005) CDK phosphorylation inhibits the DNA-binding and ATP-hydrolysis activities of the drosophila origin recognition complex. J Biol Chem 280:39740-51
Weinert, Brian T; Min, Bosun; Rio, Donald C (2005) P element excision and repair by non-homologous end joining occurs in both G1 and G2 of the cell cycle. DNA Repair (Amst) 4:171-81
Tang, Mei; Cecconi, Ciro; Kim, Helen et al. (2005) Guanosine triphosphate acts as a cofactor to promote assembly of initial P-element transposase-DNA synaptic complexes. Genes Dev 19:1422-5
Beall, Eileen L; Mahoney, Matthew B; Rio, Donald C (2002) Identification and analysis of a hyperactive mutant form of Drosophila P-element transposase. Genetics 162:217-27

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