This research will use a molecular genetic approach to examine the regulation of a major intersection between catabolic and anabolic pathways in eucaryotic cells. Our focus is the family of isozymes of isocitrate dehydrogenase and our goal is to determine the role of these enzymes in controlling metabolic flux of carbon and reducing equivalents across compartmental barriers. These isozymes include a mitochondrial NAD+- specific enzyme (IDH), which catalyzes an allosterically regulated reaction in the tricarboxylic acid cycle, and two NADP+-specific enzymes, which are structurally similar but differentially localized in mitochondrial (IDP1) and cytosolic (IDP2) cellular compartments. Previous efforts have been focused on cloning and sequence analysis of the genes from Saccharomyces cerevisiae encoding each isozyme. Initial experiments in this proposal will examine the growth phenotypes and metabolic defects associated with loss of each isozyme by construction of mutant yeast strains containing all possible combinations of disruptions in genes encoding the isocitrate dehydrogenases. Subsequent experiments will test the importance of allosteric regulation and of mitochondrial localization for function of the NAD+-specific enzyme in the tricarboxylic acid cycle in vivo. This will be achieved by expression of mutant forms of that enzyme in yeast strains with defined metabolic defects. In other experiments, a collection of yeast mutants lacking combinations of the NADP+-specific isozymes and of a functional hexose monophosphate pathway will be constructed to assess relative contributions to cellular pools of biosynthetic NADPH reducing equivalents. Finally, these studies will be extended to mammalian systems with analyses of sequences and expression of cDNAs for the isocitrate dehydrogenases.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
1R01GM051265-01
Application #
2189660
Study Section
Physical Biochemistry Study Section (PB)
Project Start
1994-08-01
Project End
1998-07-31
Budget Start
1994-08-01
Budget End
1995-07-31
Support Year
1
Fiscal Year
1994
Total Cost
Indirect Cost
Name
University of Texas Health Science Center San Antonio
Department
Biochemistry
Type
Schools of Medicine
DUNS #
800772162
City
San Antonio
State
TX
Country
United States
Zip Code
78229
McAlister-Henn, Lee (2012) Ligand binding and structural changes associated with allostery in yeast NAD(+)-specific isocitrate dehydrogenase. Arch Biochem Biophys 519:112-7
Lin, An-Ping; Demeler, Borries; Minard, Karyl I et al. (2011) Construction and analyses of tetrameric forms of yeast NAD+-specific isocitrate dehydrogenase. Biochemistry 50:230-9
Lin, An-Ping; McAlister-Henn, Lee (2011) Basis for half-site ligand binding in yeast NAD(+)-specific isocitrate dehydrogenase. Biochemistry 50:8241-50
Lin, An-Ping; Anderson, Sondra L; Minard, Karyl I et al. (2011) Effects of excess succinate and retrograde control of metabolite accumulation in yeast tricarboxylic cycle mutants. J Biol Chem 286:33737-46
Minard, Karyl I; McAlister-Henn, Lee (2010) Pnc1p supports increases in cellular NAD(H) levels in response to internal or external oxidative stress. Biochemistry 49:6299-301
Lu, Qian; McAlister-Henn, Lee (2010) Peroxisomal localization and function of NADP+ -specific isocitrate dehydrogenases in yeast. Arch Biochem Biophys 493:125-34
Minard, Karyl I; McAlister-Henn, L (2009) Redox responses in yeast to acetate as the carbon source. Arch Biochem Biophys 483:136-43
Garcia, Joshua A; Minard, Karyl I; Lin, An-Ping et al. (2009) Disulfide bond formation in yeast NAD+-specific isocitrate dehydrogenase. Biochemistry 48:8869-78
Lin, An-Ping; Hakala, Kevin W; Weintraub, Susan T et al. (2008) Suppression of metabolic defects of yeast isocitrate dehydrogenase and aconitase mutants by loss of citrate synthase. Arch Biochem Biophys 474:205-12
Hu, Gang; Taylor, Alexander B; McAlister-Henn, Lee et al. (2007) Crystal structure of the yeast nicotinamidase Pnc1p. Arch Biochem Biophys 461:66-75

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