The long-term goal of this work is to understand how cells sense and respond to extracellular signals. We will study a signal transduction cascade in budding yeast important for responding to changes in the level of extracellular inorganic phosphate (the """"""""Pho"""""""" pathway). We have previously shown that the transcription factor Pho4 is a target for a phosphate-responsive signal transduction pathway composed of the Pho80-Pho85 cyclin-cyclin dependent kinase (CDK) complex and the CDK inhibitor Pho81. We understand much about the function and regulation of these components, but little about how cells sense phosphate levels and generate an appropriate physiological response. We will focus on how the Pho pathway processes information and coordinates a response to different phosphate levels. The CDK Pho85 associates with nine cyclins, in addition to the cyclin Pho80 involved in phosphate metabolism. The processes regulated by these Pho85-cyclin complexes are unclear, largely because few physiologically-relevant substrates have been identified. We will employ a new method for identification of protein kinase substrates, with the goal of providing insight into the biological processes regulated by the CDK Pho85. Ultimately the phosphate signal reaches the nucleus, resulting in regulation of phosphate-responsive genes such as PH05. The promoter of the PH05 gene is an excellent system for studying the relationship between gene regulation and chromatin structure. We have recently identified factors which are required to remodel PH05 promoter chromatin and have observed that small molecules (inositol polyphosphates) regulate this process. We will focus on understanding how chromatin is remodeled at the PH05 promoter and how this process is regulated. These studies will provide insight into mechanisms of signal transduction and transcriptional regulation, basic cell biological processes which are misregulated in human diseases and cancer.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM051377-10A1
Application #
6738365
Study Section
Special Emphasis Panel (ZRG1-VISC (02))
Program Officer
Anderson, James J
Project Start
1994-08-01
Project End
2007-11-30
Budget Start
2003-12-01
Budget End
2004-11-30
Support Year
10
Fiscal Year
2004
Total Cost
$340,092
Indirect Cost
Name
University of California San Francisco
Department
Biochemistry
Type
Schools of Medicine
DUNS #
094878337
City
San Francisco
State
CA
Country
United States
Zip Code
94143
Hao, Nan; O'Shea, Erin K (2011) Signal-dependent dynamics of transcription factor translocation controls gene expression. Nat Struct Mol Biol 19:31-9
Zhou, Xu; O'Shea, Erin K (2011) Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4. Mol Cell 42:826-36
Kim, Harold D; Shay, Tal; O'Shea, Erin K et al. (2009) Transcriptional regulatory circuits: predicting numbers from alphabets. Science 325:429-32
Lam, Felix H; Steger, David J; O'Shea, Erin K (2008) Chromatin decouples promoter threshold from dynamic range. Nature 453:246-50
Lee, Young-Sam; Huang, Kexin; Quiocho, Florante A et al. (2008) Molecular basis of cyclin-CDK-CKI regulation by reversible binding of an inositol pyrophosphate. Nat Chem Biol 4:25-32
Kim, Harold D; O'Shea, Erin K (2008) A quantitative model of transcription factor-activated gene expression. Nat Struct Mol Biol 15:1192-8
Huang, Kexin; Ferrin-O'Connell, Ian; Zhang, Wei et al. (2007) Structure of the Pho85-Pho80 CDK-cyclin complex of the phosphate-responsive signal transduction pathway. Mol Cell 28:614-23
Lee, Young-Sam; Mulugu, Sashidhar; York, John D et al. (2007) Regulation of a cyclin-CDK-CDK inhibitor complex by inositol pyrophosphates. Science 316:109-12
Wykoff, Dennis D; Rizvi, Abbas H; Raser, Jonathan M et al. (2007) Positive feedback regulates switching of phosphate transporters in S. cerevisiae. Mol Cell 27:1005-13
Raser, Jonathan M; O'Shea, Erin K (2005) Noise in gene expression: origins, consequences, and control. Science 309:2010-3

Showing the most recent 10 out of 28 publications