To understand normal development and differentiation, it is necessary to determine the mechanisms by which cells initiate new programs of gene expression and promote formation of specific cell lineages. Typically, this involves activation of genes that are transcriptionally silent and that are likely incorporated into repressive chromatin structure. Evidence supports the idea that differentiation specific transcriptional regulators and enzymes that remodel or alter chromatin structure cooperate to render genomic DNA more accessible to the transcriptional machinery. SWI/SNF enzymes remodel nucleosome structure in an ATP dependent manner and facilitate transcription factor function in vitro and in vivo. Components of these enzymes are essential for embryonic development and some act as tumor suppressors. Additionally, SWI/SNF enzymes interact with other known tumor suppressors and are implicated in cell cycle control. Thus these enzymes are broadly required for normal cell function and for differentiation and development, and their misregulation is implicated in tumor formation. Skeletal muscle differentiation has long been a model for studying fundamental principles of tissue differentiation. We have made extensive use of cell culture models to identify and characterize chromatin remodeling enzyme function during skeletal muscle differentiation. Via modification of existing methodologies, we are now also capable of examining changes in chromatin structure and regulatory protein interactions that lead to gene activation during embryonic myogenesis and during the activation and maintenance of gene expression in adult tissue. Recent advances allow us to examine the regulation of myogenic gene expression specifically in the somites, at the start of myogenesis in the embryo, which further extends our abilities to understand the molecular control of myogenesis in the context of embryonic development. This renewal application will focus on SWI/SNF chromatin remodeling enzyme function at several levels. We will investigate how SWI/SNF enzymes cooperate with myogenic transcription factors and histone modifying enzymes to promote temporal control of myogenic gene expression (AIm 1). We will investigate how signal transduction pathways required for myogenesis regulate chromatin remodeling enzyme function (Aim 2). Finally, we will investigate SWI/SNF chromatin remodeling enzyme function in the differentiation dependent rearrangement of myogenic gene positioning in the nucleus and how this process contributes to the temporal control of myogenic gene expression (Aim 3).
Our proposed studies addressing the regulation of tissue-specific gene expression during embryonic and adult skeletal muscle differentiation and maintenance at a molecular level will have significant impact on our overall understanding of muscle development in the embryo and muscle regeneration in the adult. This work will also increase our understanding of changes that occur in muscle diseases where increased muscle growth (hypertrophy) or reduced muscle development (hypotrophy) are exhibited and on the formation of rhabdomyosarcomas, which are tumors of myogenic derivation.
|Cho, Ok Hyun; Mallappa, Chandrashekara; Hernández-Hernández, J Manuel et al. (2015) Contrasting roles for MyoD in organizing myogenic promoter structures during embryonic skeletal muscle development. Dev Dyn 244:43-55|
|LeBlanc, Scott E; Wu, Qiong; Barutcu, A Rasim et al. (2014) The PPAR? locus makes long-range chromatin interactions with selected tissue-specific gene loci during adipocyte differentiation in a protein kinase A dependent manner. PLoS One 9:e86140|
|Barutcu, A Rasim; Tai, Phillip W L; Wu, Hai et al. (2014) The bone-specific Runx2-P1 promoter displays conserved three-dimensional chromatin structure with the syntenic Supt3h promoter. Nucleic Acids Res 42:10360-72|
|Tortelote, Giovane G; Hernandez-Hernandez, J Manuel; Quaresma, Alexandre J C et al. (2013) Wnt3 function in the epiblast is required for the maintenance but not the initiation of gastrulation in mice. Dev Biol 374:164-73|
|Hernandez-Hernandez, J Manuel; Mallappa, Chandrashekara; Nasipak, Brian T et al. (2013) The Scaffold attachment factor b1 (Safb1) regulates myogenic differentiation by facilitating the transition of myogenic gene chromatin from a repressed to an activated state. Nucleic Acids Res 41:5704-16|
|Ohkawa, Yasuyuki; Mallappa, Chandrashekara; Vallaster, Caroline S Dacwag et al. (2012) Isolation of nuclei from skeletal muscle satellite cells and myofibers for use in chromatin immunoprecipitation assays. Methods Mol Biol 798:517-30|
|Ohkawa, Yasuyuki; Mallappa, Chandrashekara; Vallaster, Caroline S Dacwag et al. (2012) An improved restriction enzyme accessibility assay for analyzing changes in chromatin structure in samples of limited cell number. Methods Mol Biol 798:531-42|
|Mallappa, Chandrashekara; Hu, Yu-Jie; Shamulailatpam, Priscilla et al. (2011) The expression of myogenic microRNAs indirectly requires protein arginine methyltransferase (Prmt)5 but directly requires Prmt4. Nucleic Acids Res 39:1243-55|
|Cho, Ok Hyun; Rivera-Perez, Jaime A; Imbalzano, Anthony N (2011) Chromatin immunoprecipitation assay for tissue-specific genes using early-stage mouse embryos. J Vis Exp :|
|Karkhanis, Vrajesh; Hu, Yu-Jie; Baiocchi, Robert A et al. (2011) Versatility of PRMT5-induced methylation in growth control and development. Trends Biochem Sci 36:633-41|
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