The PI proposes to expand on previously published work of hers and develop a comprehensive semiparametric methodology for gene localization by linkage disequilibrium. The methods will be applicable to a variety of study designs and study populations. The proposed methods require only minimal assumptions about the population and the genetics of the disease and are computationally simple. Tools will be developed for validating the underlying assumptions of the model, for improving the gene location estimate and confidence interval given the model, and for providing guidelines as to the requirements and limitations of the methods in realistic genetics settings.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
1R01GM062628-01
Application #
6263015
Study Section
Genome Study Section (GNM)
Program Officer
Eckstrand, Irene A
Project Start
2000-09-11
Project End
2005-08-31
Budget Start
2000-09-11
Budget End
2001-08-31
Support Year
1
Fiscal Year
2000
Total Cost
$207,553
Indirect Cost
Name
Stanford University
Department
Miscellaneous
Type
Schools of Medicine
DUNS #
800771545
City
Stanford
State
CA
Country
United States
Zip Code
94305
Strnad, Pavel; Zhou, Qin; Hanada, Shinichiro et al. (2010) Keratin variants predispose to acute liver failure and adverse outcome: race and ethnic associations. Gastroenterology 139:828-35, 835.e1-3
Cao, Thai M; Lazzeroni, Laura C; Tsai, Schickwann et al. (2009) Identification of a major susceptibility locus for lethal graft-versus-host disease in MHC-matched mice. J Immunol 183:462-9
Taylor, Matthew R G; Slavov, Dobromir; Humphrey, Kurt et al. (2009) Pharmacogenetic effect of an endothelin-1 haplotype on response to bucindolol therapy in chronic heart failure. Pharmacogenet Genomics 19:35-43
Selwood, Simon P; Parvathy, S; Cordell, Barbara et al. (2009) Gene expression profile of the PDAPP mouse model for Alzheimer's disease with and without Apolipoprotein E. Neurobiol Aging 30:574-90
Strnad, Pavel; Lienau, Tim C; Tao, Guo-Zhong et al. (2006) Keratin variants associate with progression of fibrosis during chronic hepatitis C infection. Hepatology 43:1354-63
Wu, H Irene; Brown, James A; Dorie, Mary J et al. (2004) Genome-wide identification of genes conferring resistance to the anticancer agents cisplatin, oxaliplatin, and mitomycin C. Cancer Res 64:3940-8
Noble, Janelle A; White, Amy M; Lazzeroni, Laura C et al. (2003) A polymorphism in the TCF7 gene, C883A, is associated with type 1 diabetes. Diabetes 52:1579-82
Lazzeroni, Laura C (2002) Allele sharing and allelic association I: sib pair tests with increased power. Genet Epidemiol 22:328-44
Mirel, Daniel B; Valdes, Ana Maria; Lazzeroni, Laura C et al. (2002) Association of IL4R haplotypes with type 1 diabetes. Diabetes 51:3336-41
Lazzeroni, L C (2001) A chronology of fine-scale gene mapping by linkage disequilibrium. Stat Methods Med Res 10:57-76