By combining innovative, cutting edge technologies with established approaches, the proposed research will uncover fundamental mechanistic principles governing clathrin-mediated endocytosis (CME) in mammalian cells. Expression of fluorescent protein fusions at endogenous levels in genome-edited cells will allow more faithful reporting of endocytic dynamics than could have previously been achieved. As a result, effects of RNAi, physical and small molecule perturbations will be more sensitively detected and more powerfully analyzed than was previously possible. The expected outcome of this research is an understanding of how coordinated activities of dozens of proteins are harnessed for the mechanochemical process of endocytic vesicle formation. Because multiple proteins will be analyzed, holistic design principles for the endocytic system will be revealed.
Three aims will be addressed: 1. Spatio-temporal dynamics of endocytic protein recruitment and vesicle formation: Using genome-edited, stable cell lines expressing pair-wise combinations of five different endocytic protein-fluorescent protein fusions at native levels, real-time imaging and analytical software will be used to determine precise recruitment profiles, providing powerful insights into function, mechanism, regulation and system logic. The data will be modeled mathematically and will generate hypotheses for functional studies. Mathematical modeling will also explore the hypothesis that lipids play an active role in generation of membrane-bending and scission forces. 2. Elucidation of endocytic protein functions in vivo: Real-time imaging of genome-edited cell lines will sensitively test the impact of function perturbations on CME. Functions of endocytic proteins in their biological context will be elucidated using RNAi and small molecule inhibitors. Functions of known endocytic proteins and three novel endocytic proteins identified in a bioinformatic screen will be tested. The ultrastructural underpinnings of real-time observations will be revealed by electron microscopy. Chemical-genetic strategies will be improved by genome editing to elucidate clathrin light chain function in vivo. 3. Impact of cargo, physical and developmental parameters on endocytic dynamics: The hypotheses that endocytic cargo load and membrane tension affect CME dynamics will be tested. Using genome-edited cell lines of varied tissue origin and stem cells, the hypothesis that CME is fine-tuned and modified developmentally for distinct physiological states will be tested.

Public Health Relevance

Three decades of evidence directly connects perturbation of clathrin-mediated endocytosis (CME) to a broad range of pathophysiological outcomes, including atherosclerosis, disorders of the peripheral CNS, and infection by the hepatitis C virus. Endocytosis is responsible for uptake of molecules from the plasma membrane and surrounding environment, and therefore is crucial for determining how a cell will interact with its surroundings. For these reasons, mechanistic understanding of CME is crucial to understanding normal cell physiology and a variety of pathological conditions.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM065462-11
Application #
8692834
Study Section
Nuclear and Cytoplasmic Structure/Function and Dynamics Study Section (NCSD)
Program Officer
Ainsztein, Alexandra M
Project Start
2002-04-01
Project End
2016-06-30
Budget Start
2014-07-01
Budget End
2015-06-30
Support Year
11
Fiscal Year
2014
Total Cost
$312,833
Indirect Cost
$107,012
Name
University of California Berkeley
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
124726725
City
Berkeley
State
CA
Country
United States
Zip Code
94704
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