The long-term goal of this research is to elucidate the reaction mechanisms of NO detoxification catalyzed by iron-containing bacterial metalloenzymes. Our studies will combine investigations of native microbial enzymatic systems, bioengineered and synthetic models. They will focus on 1) the anaerobic reduction of NO to nitrous oxide (N2O) by denitrifying NO reductases (cNORs) and flavodiiron proteins (FDPs), and 2) the aerobic oxidation of NO to nitrate (NO3-) by members of the hemoglobin superfamily and by nonheme iron containing enzymes. All the enzymes involved in these reactions have been characterized by X-ray crystallography, but the origin of their catalytic power and whether common catalytic routes are used for each reaction remains unknown. Coupling resonance Raman, FTIR, and EPR spectroscopies with time-resolved approaches will define intermediates along these reactions. For the NO reduction reaction, we aim to define precursor to the N-N bond formation and the protonation events that must take place to convert two NO molecules to N2O and H2O. For the oxidative detoxification of NO, the major goals are to characterize iron(III)-peroxynitrite species and the mechanism of O-O bond cleavage leading to the nitrate product.

Public Health Relevance

The goal of this research is to elucidate the mechanisms of NO detoxification employed by microorganisms to combat the mammalian immune response. The microbial enzymes involved in these processes are pathogen virulence factors, and with no human orthologs, they represent potential targets for new therapeutic approaches. While these enzymes are structurally distinct, they all utilize iron redox chemistry, and to understand these reactions requires a combination of rapid kinetics and molecular spectroscopies.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM074785-10
Application #
9174481
Study Section
Special Emphasis Panel (ZRG1-BCMB-D (02)M)
Program Officer
Anderson, Vernon
Project Start
2006-04-01
Project End
2020-07-31
Budget Start
2016-09-01
Budget End
2017-07-31
Support Year
10
Fiscal Year
2016
Total Cost
$317,266
Indirect Cost
$107,266
Name
Oregon Health and Science University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
096997515
City
Portland
State
OR
Country
United States
Zip Code
97239
Bhagi-Damodaran, Ambika; Reed, Julian H; Zhu, Qianhong et al. (2018) Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase. Proc Natl Acad Sci U S A 115:6195-6200
Sabuncu, Sinan; Reed, Julian H; Lu, Yi et al. (2018) Nitric oxide reductase activity in heme-nonheme binuclear engineered myoglobins through a one-electron reduction cycle. J Am Chem Soc :
Reed, Julian H; Shi, Yelu; Zhu, Qianhong et al. (2017) Manganese and Cobalt in the Nonheme-Metal-Binding Site of a Biosynthetic Model of Heme-Copper Oxidase Superfamily Confer Oxidase Activity through Redox-Inactive Mechanism. J Am Chem Soc 139:12209-12218
Bhagi-Damodaran, Ambika; Michael, Matthew A; Zhu, Qianhong et al. (2017) Why copper is preferred over iron for oxygen activation and reduction in haem-copper oxidases. Nat Chem 9:257-263
Sharma, Savita K; Schaefer, Andrew W; Lim, Hyeongtaek et al. (2017) A Six-Coordinate Peroxynitrite Low-Spin Iron(III) Porphyrinate Complex-The Product of the Reaction of Nitrogen Monoxide (·NO(g)) with a Ferric-Superoxide Species. J Am Chem Soc 139:17421-17430
Nilsson, Zach N; Mandella, Brian L; Sen, Kakali et al. (2017) Distinguishing Nitro vs Nitrito Coordination in Cytochrome c' Using Vibrational Spectroscopy and Density Functional Theory. Inorg Chem 56:13205-13213
Confer, Alex M; McQuilken, Alison C; Matsumura, Hirotoshi et al. (2017) A Nonheme, High-Spin {FeNO}8 Complex that Spontaneously Generates N2O. J Am Chem Soc 139:10621-10624
McQuilken, Alison C; Matsumura, Hirotoshi; Dürr, Maximilian et al. (2016) Photoinitiated Reactivity of a Thiolate-Ligated, Spin-Crossover Nonheme {FeNO}(7) Complex with Dioxygen. J Am Chem Soc 138:3107-17
Basudhar, Debashree; Madrona, Yarrow; Yukl, Erik T et al. (2016) Distal Hydrogen-bonding Interactions in Ligand Sensing and Signaling by Mycobacterium tuberculosis DosS. J Biol Chem 291:16100-11
Matsumura, Hirotoshi; Chakraborty, Saumen; Reed, Julian et al. (2016) Effect of Outer-Sphere Side Chain Substitutions on the Fate of the trans Iron-Nitrosyl Dimer in Heme/Nonheme Engineered Myoglobins (Fe(B)Mbs): Insights into the Mechanism of Denitrifying NO Reductases. Biochemistry 55:2091-9

Showing the most recent 10 out of 38 publications