Uncontrolled growth of cancer cells is inevitably accompanied by dysregulation of RNA polymerase I activity and ribosome synthesis. Thus, the mechanisms that control ribosomal RNA transcription by RNA polymerase I are directly relevant to the study of cell transformation and tumor cell growth. The overall goal of this project is to characterize the molecular mechanisms that control RNA polymerase I transcription initiation and elongation. Detailed understanding of these regulatory processes will lay the foundation for future therapeutic strategies that target ribosome synthesis to control the growth of cancer cells. Initiation of transcription by RNA polymerase I is regulated in response to growth conditions. However, the mechanisms responsible for this regulation are complex and incompletely defined. Core factor is an essential member of the basal RNA polymerase I transcription machinery but has not been previously identified as a target for regulation of ribosome synthesis.
The first aim of this proposal will identify the molecular mechanisms responsible for the regulation core factor activity and abundance. Previous studies directed at characterizing the control of RNA polymerase I transcription have focused almost exclusively on the initiation step of transcription. Recently, it was shown that Spt4p and Spt5p interact with RNA polymerase I and influence transcription elongation and ribosomal RNA processing in vivo.
The second aim of this proposal will determine the molecular mechanism(s) by which Spt4p and Spt5p control RNA polymerase I transcription elongation and relate this activity to processing of ribosomal RNA. Recent data demonstrate that processing of ribosomal RNA is coupled to transcription elongation by RNA polymerase I. Additionally, RNA polymerase I elongation was recently identified as a target for regulation of ribosome synthesis rates. However, very few factors that influence transcription elongation by RNA polymerase I have been identified. Thus, there is a need to identify and characterize the factors that control this activity of the enzyme. To address this need, the third aim of this proposal will characterize six candidate transcription elongation factors that were previously identified for their roles in RNA polymerase II transcription and have been shown recently to bind the ribosomal DNA in vivo.

Public Health Relevance

The overall goal of this project is to identify and characterize mechanisms by which eukaryotic cells control ribosomal RNA synthesis and ribosome assembly. Increased ribosome synthesis rates have long been known to correlate with the increased cell proliferation rates observed in cancer cells. These studies will lay the foundation for future therapeutic strategies aimed at controlling cell growth and proliferation.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM084946-05
Application #
8511697
Study Section
Molecular Genetics A Study Section (MGA)
Program Officer
Sledjeski, Darren D
Project Start
2009-09-30
Project End
2014-07-31
Budget Start
2013-08-01
Budget End
2014-07-31
Support Year
5
Fiscal Year
2013
Total Cost
$277,118
Indirect Cost
$87,959
Name
University of Alabama Birmingham
Department
Biochemistry
Type
Schools of Medicine
DUNS #
063690705
City
Birmingham
State
AL
Country
United States
Zip Code
35294
Zhang, Yinfeng; Najmi, Saman M; Schneider, David A (2016) Transcription factors that influence RNA polymerases I and II: To what extent is mechanism of action conserved? Biochim Biophys Acta :
Zhang, Yinfeng; French, Sarah L; Beyer, Ann L et al. (2016) The Transcription Factor THO Promotes Transcription Initiation and Elongation by RNA Polymerase I. J Biol Chem 291:3010-8
Appling, Francis D; Lucius, Aaron L; Schneider, David A (2015) Transient-State Kinetic Analysis of the RNA Polymerase I Nucleotide Incorporation Mechanism. Biophys J 109:2382-93
Engel, Krysta L; French, Sarah L; Viktorovskaya, Olga V et al. (2015) Spt6 Is Essential for rRNA Synthesis by RNA Polymerase I. Mol Cell Biol 35:2321-31
Viktorovskaya, Olga V; Schneider, David A (2015) Functional divergence of eukaryotic RNA polymerases: unique properties of RNA polymerase I suit its cellular role. Gene 556:19-26
Appling, Francis Dean; Schneider, David Alan (2015) Purification of active RNA polymerase I from yeast. Methods Mol Biol 1276:281-9
Dobbin, Zachary C; Katre, Ashwini A; Steg, Adam D et al. (2014) Using heterogeneity of the patient-derived xenograft model to identify the chemoresistant population in ovarian cancer. Oncotarget 5:8750-64
Johnson, Joseph M; Smith, Jeffrey S; Schneider, David A (2014) A user's guide to the ribosomal DNA in Saccharomyces cerevisiae. Methods Mol Biol 1205:303-28
Lu, Liang; Zheng, Lei; Si, Ying et al. (2014) Hu antigen R (HuR) is a positive regulator of the RNA-binding proteins TDP-43 and FUS/TLS: implications for amyotrophic lateral sclerosis. J Biol Chem 289:31792-804
Zhang, Yinfeng; Anderson, Susan J; French, Sarah L et al. (2013) The SWI/SNF chromatin remodeling complex influences transcription by RNA polymerase I in Saccharomyces cerevisiae. PLoS One 8:e56793

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