Transcriptional control is vital to the health and development of all organisms. Transcription is regulated in part by chemical modification of histone proteins. Acetylation, one of the most important modifications, is typically associated with gene activation while deacetylation is associated with gene repression. The SIN3 histone deacetylase (HDAC) complex, which is required for viability of organisms from S. pombe to mouse, is one of two major class I HDAC complexes. Knock down of this essential Drosophila gene results in a loss of cell proliferation without changing global histone acetylation levels. This result suggests that histone deacetylation by the SIN3 complex controls proliferation by a gene- specific regulatory mechanism. The long term goal of this laboratory is to understand how modification of chromatin regulates growth and development. The objective of this project is to elucidate the molecular mechanisms by which SIN3 isoforms regulate specific gene expression to affect cell differentiation and proliferation. These experiments are based on the hypothesis that Drosophila SIN3 isoforms have unique gene regulatory functions. Experiments of Aim 1 of the proposal will test the hypothesis that SIN3 isoform specific complexes regulate cell cycle progression. This will be accomplished by determining the effect of loss or knock down of specific isoforms on Drosophila viability and cell proliferation. Experiments of Aim 2 are designed to identify the genes and genomic regions that are regulated by each isoform and to determine how each isoform and its specific components affects deacetylation and gene repression. This research is significant as the results are anticipated to elucidate the poorly understood molecular mechanisms involved in regulation of histone deacetylation. Many types of cancer result from altered gene transcription due to mutations in protein regulators of histone acetylation. While a number of HDAC inhibitors are currently being tested as anti- cancer agents in clinical trials, the molecular mechanisms behind their tumor killing properties are not well understood. Information gained from the proposed experiments is anticipated to aid in the development of the next generation of HDAC inhibitors for use as anti-tumor agents.

Public Health Relevance

Multiple histone deacetylase inhibitors are currently being tested as anti-proliferative agents in clinical trials. Experiments outlined in this proposal are anticipated to elucidate mechanisms of action of the SIN3 histone deacetylase complex, an essential protein complex required for viability and cell cycle progression. Results from this proposal are anticipated to aid in refinement of deacetylase inhibitors designed to target cancer cells.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM088886-02
Application #
8294528
Study Section
Molecular Genetics C Study Section (MGC)
Program Officer
Carter, Anthony D
Project Start
2011-07-01
Project End
2016-05-31
Budget Start
2012-06-01
Budget End
2013-05-31
Support Year
2
Fiscal Year
2012
Total Cost
$272,629
Indirect Cost
$90,379
Name
Wayne State University
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
001962224
City
Detroit
State
MI
Country
United States
Zip Code
48202
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Liu, Mengying; Pile, Lori A (2017) The Transcriptional Corepressor SIN3 Directly Regulates Genes Involved in Methionine Catabolism and Affects Histone Methylation, Linking Epigenetics and Metabolism. J Biol Chem 292:1970-1976
Saha, Nirmalya; Liu, Mengying; Gajan, Ambikai et al. (2016) Genome-wide studies reveal novel and distinct biological pathways regulated by SIN3 isoforms. BMC Genomics 17:111
Chaubal, Ashlesha; Todi, Sokol V; Pile, Lori A (2016) Inter-isoform-dependent Regulation of the Drosophila Master Transcriptional Regulator SIN3. J Biol Chem 291:11566-71
Bellis, Mark A; Hughes, Karen; Nicholls, James et al. (2016) The alcohol harm paradox: using a national survey to explore how alcohol may disproportionately impact health in deprived individuals. BMC Public Health 16:111
Gajan, Ambikai; Barnes, Valerie L; Liu, Mengying et al. (2016) The histone demethylase dKDM5/LID interacts with the SIN3 histone deacetylase complex and shares functional similarities with SIN3. Epigenetics Chromatin 9:4
Holowatyj, Andreana; Yang, Zeng-Quan; Pile, Lori A (2015) Histone lysine demethylases in Drosophila melanogaster. Fly (Austin) 9:36-44
Barnes, Valerie L; Bhat, Abhineeth; Unnikrishnan, Archana et al. (2014) SIN3 is critical for stress resistance and modulates adult lifespan. Aging (Albany NY) 6:645-60