The ciliopathies comprise a spectrum of disorders unified by defects in primary cilia. Clinical presentations range from primary involvement of a single organ (most often hindbrain, kidney, liver or eye) to more severe presentations, such as Meckel syndrome, with severe and pleiotropic developmental phenotypes in several organs. Several genes have been and continue to be identified for ciliopathy disorders, with the overwhelming majority encoding structural components of primary cilia. Regulatory genes that control cilium-dependent signaling and modifier genes that control the outcome of ciliary defects are only beginning to be tied to pathogenic mechanisms. This project focuses on the synthetic lethal interaction between a transcriptional regulator that control ciliary phenotypes, Zfp423, and an unknown modifier gene. Zfp423 encodes a 30-zinc finger transcription factor required in several signal transduction pathways and in multiple organ systems. Animals that lack Zfp423 have prominent brain malformations with a high frequency of hydrocephalus as well as defects in several peripheral tissues. The distribution of phenotypes in surviving animals is dependent on both modifier genes and apparently stochastic processes. However, on the most commonly used strain background, no mutant animals survive. Genetic mapping identifies a single major locus linked to embryonic and perinatal lethality.
The aims of this proposal will identify this synthetic lethal modifier locus, elucidate its mechanism and place it in the context of other genes in the ciliopathy network.

Public Health Relevance

Ciliopathies are a large group of individually rare disorders that have in common defects in a specific cell component, the primary cilium. Disorders in this group cause defects in brain, eye, kidney, lung or liver;individual disorders may be caused by more than one gene and single genes may contribute to more than one of these disorders. In some cases, inheritance of three alleles at two or more loci appear to drive phenotypes. Ciliopathies appear to be frequently sensitive to genetic modifiers. Modifiers that are by themselves benign may have therapeutic potential. This application uses genetic and molecular tools to identify and understand a genetic modifier in a ciliopathy mouse model, Zfp423. Previous work from the PI's laboratory has established Zfp423 mouse models with strain-dependent range of phenotypes. This application proposes to identify a strain-dependent modifier gene that protects mice on some strain backgrounds from synthetic lethality in the common C57BL/6 strain background and to determine its mechanism of action.

National Institute of Health (NIH)
National Institute of General Medical Sciences (NIGMS)
Research Project (R01)
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Genetics of Health and Disease Study Section (GHD)
Program Officer
Krasnewich, Donna M
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University of California San Diego
Internal Medicine/Medicine
Schools of Medicine
La Jolla
United States
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Hong, Chen-Jei; Hamilton, Bruce A (2016) Zfp423 Regulates Sonic Hedgehog Signaling via Primary Cilium Function. PLoS Genet 12:e1006357
Concepcion, Dorothy; Ross, Kevin D; Hutt, Kasey R et al. (2015) Nxf1 natural variant E610G is a semi-dominant suppressor of IAP-induced RNA processing defects. PLoS Genet 11:e1005123
Zhang, Shuxiao; Ross, Kevin D; Seidner, Glen A et al. (2015) Nmf9 Encodes a Highly Conserved Protein Important to Neurological Function in Mice and Flies. PLoS Genet 11:e1005344