Aggregation of proteins of known sequence is linked to a variety of neurodegenerative disorders. Familial mutations in the Amyloid Precursor Protein (APP), from which the amyloid (A) protein associated with Alzheimer's Disease (AD) is derived, have been linked with the early onset of amyloid disease. In this computational and theoretical research proposal, augmented by synergistic experimental research collaborations, we will determine the structure and dynamics of the 99 amino acid transmembrane fragment of APP (APP-C99) in membrane environments in order to address fundamental biophysical questions articulated in three Specific Aims. (1) We will explore how length, sequence, and membrane composition influence the structure of the APP-C99 monomer. (2) The structures of APP-C99 dimers and the associated stability as well as the monomer-dimer equilibrium are also influenced by membrane composition and C99 sequence. We will investigate the influence of these environmental factors on the structure and dynamics of dimer formation. (3) We will also determine how APP-C99 interacts with cholesterol and cholesterol-analogs, as well as how those interactions influence APP-C99 structure and dimerization. The proposed coordinated studies will lead to a fundamental molecular-level understanding of the network of interactions of APP-C99 monomer and dimer, and cholesterol, which are recognized to be essential components of our understanding of APP-C99 processing, the A aggregation pathway, and potentially in the design of knowledge-based therapy for AD.
Alzheimer's Disease (AD) accounts for nearly 50% of all cases of senile dementia, is the third leading cause of death in the elderly population, and is presently incurable. The proposed computational studies and experimental collaborations will explore the structure and function of the C-terminal fragment of Amyloid Precursor Protein (APP-C99) to gain much-needed quantitative insight into its processing to form A protein, critical to AD. Our results will elucidate the role of familial AD mutations and environmental conditions, including cholesterol levels, in the processing of APP and the onset of AD, with the goal of informing the future development of preventive or early stage therapeutics.
|Pantelopulos, George A; Straub, John E (2018) Regimes of Complex Lipid Bilayer Phases Induced by Cholesterol Concentration in MD Simulation. Biophys J 115:2167-2178|
|Pantelopulos, George A; Straub, John E; Thirumalai, D et al. (2018) Structure of APP-C991-99 and implications for role of extra-membrane domains in function and oligomerization. Biochim Biophys Acta Biomembr :|
|Xu, Fangda; Bandara, Asanga; Akiyama, Hisashi et al. (2018) Membrane-wrapped nanoparticles probe divergent roles of GM3 and phosphatidylserine in lipid-mediated viral entry pathways. Proc Natl Acad Sci U S A 115:E9041-E9050|
|Bove-Fenderson, Erin; Urano, Ryo; Straub, John E et al. (2017) Cellular prion protein targets amyloid-? fibril ends via its C-terminal domain to prevent elongation. J Biol Chem 292:16858-16871|
|Pantelopulos, George A; Nagai, Tetsuro; Bandara, Asanga et al. (2017) Critical size dependence of domain formation observed in coarse-grained simulations of bilayers composed of ternary lipid mixtures. J Chem Phys 147:095101|
|Bandara, Asanga; Panahi, Afra; Pantelopulos, George A et al. (2017) Exploring the structure and stability of cholesterol dimer formation in multicomponent lipid bilayers. J Comput Chem 38:1479-1488|
|Aguayo-Ortiz, Rodrigo; Chávez-García, Cecilia; Straub, John E et al. (2017) Characterizing the structural ensemble of ?-secretase using a multiscale molecular dynamics approach. Chem Sci 8:5576-5584|
|Dominguez, Laura; Foster, Leigh; Straub, John E et al. (2016) Impact of membrane lipid composition on the structure and stability of the transmembrane domain of amyloid precursor protein. Proc Natl Acad Sci U S A 113:E5281-7|
|Panahi, Afra; Bandara, Asanga; Pantelopulos, George A et al. (2016) Specific Binding of Cholesterol to C99 Domain of Amyloid Precursor Protein Depends Critically on Charge State of Protein. J Phys Chem Lett 7:3535-41|
|Viswanath, Shruthi; Dominguez, Laura; Foster, Leigh S et al. (2015) Extension of a protein docking algorithm to membranes and applications to amyloid precursor protein dimerization. Proteins 83:2170-85|