Integrity of mitochondrial DNA is vital to functions of the organelle that include supply energy to sustain cellular activities, cell division and programmed cell death. Mutations on mitochondrial DNA are associated with neurodegenerative disorders, such as Parkinson's and Huntington's diseases, cardiovascular and skeletal muscular disorders. The high concentration of reactive oxygen species in mitochondria causes abundant oxidative damage on DNA. DNA damage repair is chiefly repaired by the base excision repair pathway. Although a wealth of knowledge on nuclear DNA base excision repair exists, comparatively much less is known about mitochondrial DNA repair. We propose to study the structures and functions of a central component in human mitochondrial DNA repair pathway, DNA polymerase gamma (Pol ?), and its interaction with another critical component, mitochondrial exonuclease ExoG. The proposed studies combine structural biology, solution biophysics, enzyme kinetics as well as chemical synthesis aiming to provide a comprehensive view of mitochondrial base excision repair.

Public Health Relevance

Despite the fact that oxidative mitochondrial DNA damage has been connected to a number of health issues: cancers, premature aging, as well as, cardiovascular, skeletal muscular and neurological disorders, little is known about two of the three subpathways in which the body attempts to repair this damage. This project focuses on these two lesser known subpathways with the goal of revealing the basis for mitochondrial DNA oxidative damage repair.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM110591-04
Application #
9352354
Study Section
Macromolecular Structure and Function B Study Section (MSFB)
Program Officer
Sledjeski, Darren D
Project Start
2014-09-01
Project End
2019-08-31
Budget Start
2017-09-01
Budget End
2019-08-31
Support Year
4
Fiscal Year
2017
Total Cost
Indirect Cost
Name
University of Texas Med Br Galveston
Department
Pharmacology
Type
Schools of Medicine
DUNS #
800771149
City
Galveston
State
TX
Country
United States
Zip Code
77555
Szymanski, Michal R; Yu, Wangsheng; Gmyrek, Aleksandra M et al. (2017) A domain in human EXOG converts apoptotic endonuclease to DNA-repair exonuclease. Nat Commun 8:14959
Ramachandran, Aparna; Nandakumar, Divya; Deshpande, Aishwarya P et al. (2016) The Yeast Mitochondrial RNA Polymerase and Transcription Factor Complex Catalyzes Efficient Priming of DNA Synthesis on Single-stranded DNA. J Biol Chem 291:16828-39
Li, Min; Mislak, Andrea C; Foli, Yram et al. (2016) The DNA Polymerase Gamma R953C Mutant Is Associated with Antiretroviral Therapy-Induced Mitochondrial Toxicity. Antimicrob Agents Chemother 60:5608-11
Williams, Tishan L; Yin, Yuhui W; Carter Jr, Charles W (2016) Selective Inhibition of Bacterial Tryptophanyl-tRNA Synthetases by Indolmycin Is Mechanism-based. J Biol Chem 291:255-65
Yang, Xu; Chang, Hae Ryung; Yin, Y Whitney (2015) Yeast Mitochondrial Transcription Factor Mtf1 Determines the Precision of Promoter-Directed Initiation of RNA Polymerase Rpo41. PLoS One 10:e0136879
Meyer, Adam J; Garry, Daniel J; Hall, Bradley et al. (2015) Transcription yield of fully 2'-modified RNA can be increased by the addition of thermostabilizing mutations to T7 RNA polymerase mutants. Nucleic Acids Res 43:7480-8
Szymanski, Michal R; Kuznetsov, Vladmir B; Shumate, Christie et al. (2015) Structural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase. EMBO J 34:1959-70
Sohl, Christal D; Szymanski, Michal R; Mislak, Andrea C et al. (2015) Probing the structural and molecular basis of nucleotide selectivity by human mitochondrial DNA polymerase ?. Proc Natl Acad Sci U S A 112:8596-601
He, Quan; Shumate, Christie K; White, Mark A et al. (2013) Exonuclease of human DNA polymerase gamma disengages its strand displacement function. Mitochondrion 13:592-601