Defects in the Hedgehog (Hh) pathway underlie a vast spectrum of human birth defects, including holoprosencephaly, cleft palate, and polydactyly. Hh signaling controls transcription by regulating the activity of Gli transcription factors. A thorough understanding of how Gli proteins recognize and activate transcriptional targets is therefore necessary to understand the genes and processes that are misregulated in Hh-associated birth defects. However, virtually nothing is known about how Gli proteins recognize target genes and interact with other transcriptional inputs.
The aim of this proposal is to define active Gli enhancers and to determine their interactions in a Hh- responsive cis regulatory network that underlies limb development. In the first approach, we will use an innovative approach to identify Hh-responsive, active enhancers different genetic backgrounds. This data will be used to construct a global gene regulatory network, defining an important set of extragenic regions with the collective potential to mediate the transcriptional effects of the Hh pathway. In a second in vivo-centered approach, we will determine the requirement for additional co-activating factors in the transcriptional regulation of Hh target genes. Finally, we will determine if the Hh and BMP pathways co-regulate target genes, focusing on the regulation the developmentally important gene, Gremlin. This study will transform our understanding of limb development by identifying active Gli enhancers and target genes in the limb, defining enhancer domains and determining co-factors. These will provide an invaluable resource for future studies and will provide a solid foundation for a systems-level understanding of limb development. The identification of these enhancers will also provide an important genomic resource for clinical scientists seeking to understand the mechanisms underlying the spectrum of BMP and Hh-associated birth defects and the hundreds of clinically distinct forms of human polydactyly.

Public Health Relevance

The results obtained from these experiments will advance our understanding of how hedgehog signaling leads to a regulated transcriptional response. They will also increase our understanding of transcriptional processes during development. Together, these results will contribute to an understanding of the mechanisms underlying the large number of hedgehog-mediated birth defects.

Agency
National Institute of Health (NIH)
Institute
Eunice Kennedy Shriver National Institute of Child Health & Human Development (NICHD)
Type
Research Project (R01)
Project #
5R01HD073151-02
Application #
8519136
Study Section
Special Emphasis Panel (ZRG1-CB-G (55))
Program Officer
Javois, Lorette Claire
Project Start
2012-08-01
Project End
2017-07-31
Budget Start
2013-08-01
Budget End
2014-07-31
Support Year
2
Fiscal Year
2013
Total Cost
$300,803
Indirect Cost
$91,528
Name
University of Texas Austin
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
170230239
City
Austin
State
TX
Country
United States
Zip Code
78712
Norrie, Jacqueline L; Lewandowski, Jordan P; Bouldin, Cortney M et al. (2014) Dynamics of BMP signaling in limb bud mesenchyme and polydactyly. Dev Biol 393:270-81
Lewandowski, Jordan P; Pursell, Taylor A; Rabinowitz, Adam H et al. (2014) Manipulating gene expression and signaling activity in cultured mouse limb bud cells. Dev Dyn 243:928-36
Falkenstein, Kristin N; Vokes, Steven A (2014) Transcriptional regulation of graded Hedgehog signaling. Semin Cell Dev Biol 33:73-80
Li, Qiang; Lewandowski, Jordan P; Powell, Marian B et al. (2014) A Gli silencer is required for robust repression of gremlin in the vertebrate limb bud. Development 141:1906-14