One of the most important directions in current biomedical research is the quest to understand the genetic contributions to complex diseases. A critical part of many such investigations is the use of linkage analysis to find possible disease susceptibility loci. Recently, there has been substantial interest in using linkage methods designed for quantitative phenotypes as a tool for finding genes associated with diseases. For example, this approach has been applied to schizophrenia, type II diabetes, hypertension, and heart disease. This growth in interest in QTL mapping in humans has been accompanied by a great deal of new work on statistical methods, but little of that work has dealt with selected samples, which are arguably more common than population samples for human studies. The general aim of this grant is to develop powerful statistics for QTL mapping with selected samples and powerful designs for selecting such samples.
The specific aims are as follows. 1) Develop and compare statistics for selectively sampled nuclear families. 2) Develop and compare statistics for selectively sampled extended pedigrees. 3) Develop end-user software to implement all of the best methods and make them readily available to investigators doing mapping studies. 4) Investigate the relative power of different sampling schemes under various genetic models. ? ?

Agency
National Institute of Health (NIH)
Institute
National Human Genome Research Institute (NHGRI)
Type
Research Project (R01)
Project #
2R01HG002374-04A1
Application #
6875907
Study Section
Genome Study Section (GNM)
Program Officer
Brooks, Lisa
Project Start
2001-08-01
Project End
2008-07-31
Budget Start
2005-08-01
Budget End
2006-07-31
Support Year
4
Fiscal Year
2005
Total Cost
$217,619
Indirect Cost
Name
University of Pittsburgh
Department
Genetics
Type
Schools of Public Health
DUNS #
004514360
City
Pittsburgh
State
PA
Country
United States
Zip Code
15213
Ghosh, Sujoy; Feingold, Eleanor; Dey, Subrata Kumar (2009) Etiology of Down syndrome: Evidence for consistent association among altered meiotic recombination, nondisjunction, and maternal age across populations. Am J Med Genet A 149A:1415-20
Lin, Yan; Tseng, George C; Cheong, Soo Yeon et al. (2008) Smarter clustering methods for SNP genotype calling. Bioinformatics 24:2665-71
Bhattacharjee, Samsiddhi; Kuo, Chia-Ling; Mukhopadhyay, Nandita et al. (2008) Robust score statistics for QTL linkage analysis. Am J Hum Genet 82:567-82
Szatkiewicz, Jin P; Feingold, Eleanor (2005) QTL mapping with discordant and concordant sibling pairs: new statistics and new design strategies. Genet Epidemiol 28:326-40
Szatkiewicz, Jin P; Feingold, Eleanor (2004) A powerful and robust new linkage statistic for discordant sibling pairs. Am J Hum Genet 75:906-9
T Cuenco, Karen; Szatkiewicz, Jin P; Feingold, Eleanor (2003) Recent advances in human quantitative-trait-locus mapping: comparison of methods for selected sibling pairs. Am J Hum Genet 73:863-73
Szatkiewicz, Jin P; T Cuenco, Karen; Feingold, Eleanor (2003) Recent advances in human quantitative-trait-locus mapping: comparison of methods for discordant sibling pairs. Am J Hum Genet 73:874-85
Feingold, Eleanor (2002) Regression-based quantitative-trait-locus mapping in the 21st century. Am J Hum Genet 71:217-22