The step-by-step evolution of novel phenotypes is central to several fundamental questions in biology. In studies of novel protein functions, the problem becomes experimentally tractable if it is possible to identify and functionally characterize the complete set of causative mutations. With such a system, it is possible to address key questions: Do novel functions evolve via the successive fixation of beneficial mutations that each produce an adaptive change in phenotype when they first arise? Alternatively, are evolutionary transitions in protein function facilitated by neutral mutations that produce no adaptive benefit when they first arise, but which potentiate the function-altering effects of subsequent mutations? By reconstructing all possible mutational pathways that connect ancestral and descendant proteins it is also possible to address fundamental questions about the roles of contingency and determinism in protein evolution. For example: Can novel functions evolve from any possible ancestral starting point, or are specific evolutionary outcomes contingent on prior history? We will address these questions by experimentally dissecting the molecular basis of a key physiological innovation during vertebrate evolution. Specifically, we will examine the evolution of a unique allosteric mechanism for regulating hemoglobin (Hb) function in the red blood cells of crocodilians. This unique mode of allosteric regulatory control contributes to crocodilians? extraordinary capacities for breath-hold diving. Using ancestral protein resurrection in conjunction with a combinatorial protein engineering approach based on site- directed mutagenesis, we will examine the effects of sequential mutational steps in the evolution of the novel allosteric mechanism of crocodilian Hb. We will also obtain insights into the structural basis of the change in Hb function, as X-ray crystallography experiments will reveal biophysical mechanisms at atomic resolution.
The specific aims of the project are as follows: (1) Identify the specific mutations that are responsible for the evolution of the novel protein function, and quantify their additive and nonadditive effects; and (2) Identify and characterize the biophysical mechanisms responsible for the functional transition (gain of novel function, loss of ancestral function). In combination, accomplishing Specific Aims 1 and 2 will reveal the molecular basis of a key physiological innovation and will provide general insights into the pathways by which such innovations evolve.

Public Health Relevance

This research project is designed to reveal the specific amino acid mutations that are responsible for changes in the regulation of hemoglobin (Hb) function. Hb is a critically important protein that is responsible for circulatory oxygen-transport in red blood cells. Our insights into the functional effects of Hb mutations can help guide the design of recombinant Hbs for use as cell-free O2-carriers in transfusion medicine.

Agency
National Institute of Health (NIH)
Institute
National Heart, Lung, and Blood Institute (NHLBI)
Type
Research Project (R01)
Project #
2R01HL087216-10A1
Application #
9594940
Study Section
Genetic Variation and Evolution Study Section (GVE)
Program Officer
Luksenburg, Harvey
Project Start
2008-09-22
Project End
2022-08-31
Budget Start
2018-09-01
Budget End
2019-08-31
Support Year
10
Fiscal Year
2018
Total Cost
Indirect Cost
Name
University of Nebraska Lincoln
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
555456995
City
Lincoln
State
NE
Country
United States
Zip Code
68503
Storz, Jay F (2017) Compensatory mutations and epistasis for protein function. Curr Opin Struct Biol 50:18-25
Kumar, Amit; Natarajan, Chandrasekhar; Moriyama, Hideaki et al. (2017) Stability-Mediated Epistasis Restricts Accessible Mutational Pathways in the Functional Evolution of Avian Hemoglobin. Mol Biol Evol 34:1240-1251
Tate, Kevin B; Ivy, Catherine M; Velotta, Jonathan P et al. (2017) Circulatory mechanisms underlying adaptive increases in thermogenic capacity in high-altitude deer mice. J Exp Biol 220:3616-3620
Lau, Daphne S; Connaty, Alex D; Mahalingam, Sajeni et al. (2017) Acclimation to hypoxia increases carbohydrate use during exercise in high-altitude deer mice. Am J Physiol Regul Integr Comp Physiol 312:R400-R411
Storz, Jay F (2016) Hemoglobin-oxygen affinity in high-altitude vertebrates: is there evidence for an adaptive trend? J Exp Biol 219:3190-3203
Natarajan, Chandrasekhar; Hoffmann, Federico G; Weber, Roy E et al. (2016) Predictable convergence in hemoglobin function has unpredictable molecular underpinnings. Science 354:336-339
Storz, Jay F; Cheviron, Zachary A (2016) Functional Genomic Insights into Regulatory Mechanisms of High-Altitude Adaptation. Adv Exp Med Biol 903:113-28
Jensen, Birgitte; Storz, Jay F; Fago, Angela (2016) Bohr effect and temperature sensitivity of hemoglobins from highland and lowland deer mice. Comp Biochem Physiol A Mol Integr Physiol 195:10-4
Storz, Jay F (2016) Causes of molecular convergence and parallelism in protein evolution. Nat Rev Genet 17:239-50
Storz, Jay F (2016) Gene Duplication and Evolutionary Innovations in Hemoglobin-Oxygen Transport. Physiology (Bethesda) 31:223-32

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