Sporadic point mutations and large copy number variants (CNVs) contribute significantly to the etiology of autism but relatively few genes have been proven to be pathogenic. The goal of this project is to identify genes responsible for autism spectrum disorder (ASD) and developmental delay. We will apply an integrated approach combining exome sequence data and detailed ab initio CNV analysis to pinpoint likely candidate genes. We will test these candidates for an excess of de novo disruptive mutations in case versus control trios. There are three specific aims: 1) Expand our existing CNV morbidity map to include data from >40,000 cases of developmental delay versus 20,000 controls and integrate these data with emerging exome data to identify likely haploinsufficient genes;2) Assess whether the burden of disruptive de novo mutations in these genes is significantly enriched in ASD families by molecular inversion probe (MIP) resequencing of approximately 6,200 cases and 6,200 controls;and 3) Select ten genes with the highest burden of de novo mutations for further clinical evaluation, phenotypic variability, and comprehensive genetic characterization. The end product of this analysis will be the identification and characterization of highly penetran genic mutations that contribute significantly to etiology of autism, providing targets for clinical diagnostics and future therapeutics.
This study integrates two common genetic risk factors (copy number variation and point mutations) of autism and developmental delay to pinpoint likely disease-causing genes. We will test the significance of sporadic loss-of-function mutations in these genes by applying cutting-edge genomic technologies to examine large numbers of families with autism. We will select a subset of genes and families for clinical follow-up to determine if there are common features and whether the mutations are necessary and sufficient to cause disease.
|Lugtenberg, Dorien; Reijnders, Margot R F; Fenckova, Michaela et al. (2016) De novo loss-of-function mutations in WAC cause a recognizable intellectual disability syndrome and learning deficits in Drosophila. Eur J Hum Genet 24:1145-53|
|Stessman, Holly A F; Turner, Tychele N; Eichler, Evan E (2016) Molecular subtyping and improved treatment of neurodevelopmental disease. Genome Med 8:22|
|Stessman, Holly A F; Willemsen, Marjolein H; Fenckova, Michaela et al. (2016) Disruption of POGZ Is Associated with Intellectual Disability and Autism Spectrum Disorders. Am J Hum Genet 98:541-52|
|Ba, Wei; Yan, Yan; Reijnders, Margot R F et al. (2016) TRIO loss of function is associated with mild intellectual disability and affects dendritic branching and synapse function. Hum Mol Genet 25:892-902|
|van Bon, B W M; Coe, B P; Bernier, R et al. (2016) Disruptive de novo mutations of DYRK1A lead to a syndromic form of autism and ID. Mol Psychiatry 21:126-32|
|Duyzend, Michael H; Nuttle, Xander; Coe, Bradley P et al. (2016) Maternal Modifiers and Parent-of-Origin Bias of the Autism-Associated 16p11.2 CNV. Am J Hum Genet 98:45-57|
|Wang, Tianyun; Guo, Hui; Xiong, Bo et al. (2016) De novo genic mutations among a Chinese autism spectrum disorder cohort. Nat Commun 7:13316|
|Krumm, Niklas; Turner, Tychele N; Baker, Carl et al. (2015) Excess of rare, inherited truncating mutations in autism. Nat Genet 47:582-8|
|Duyzend, Michael H; Eichler, Evan E (2015) Genotype-first analysis of the 16p11.2 deletion defines a new type of "autism". Biol Psychiatry 77:769-71|
|Snyder, Matthew W; Simmons, LaVone E; Kitzman, Jacob O et al. (2015) Copy-number variation and false positive prenatal aneuploidy screening results. N Engl J Med 372:1639-45|
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