Humans are remarkable hosts to microbes, and we have in fact co-evolved as highly plethoric communities. Human-associated microorganisms (the "microbiome") are present in numbers exceeding the quantities of human cells by at least 10-fold beginning in the neonatal period The collective genome (the "metagenome") exceeds our human genome in terms of gene content by more than 150-fold. With respect to microbiota and preterm birth, it has generally assumed that the majority of intrauterine infections originate in the lower genital tract, with microbiota ascending into the otherwise sterile intrauterine environment to infect the placenta (preterm birth), fetal membranes (chorioamnionitis), umbilical cord (funisitis), and the fetus (sepsis). However, we and others have recently demonstrated that (1) the vaginal and gut microbiome communities are distinctly structured in pregnancy, and (2) the placenta is in fact not sterile, but rather harbors a low-abundance microbiome which is likely acquired through hematogenous transmission of the oral microbiome. Based on our prior studies and preliminary data, our central hypothesis is that a distinct and largely commensal resident microbiome in pregnancy renders risk for preterm birth. In order to prove this hypothesis, we will execute three essential aims:
Aim 1 will use 16S-based approaches with inferred metagenomics employing samples from at-risk gravidae enrolled at <20 weeks gestation to reveal distinct microbial communities which occur in association with preterm birth;
Aims 2 &3 will use whole-genome shotgun sequencing with integrated host genomics, metatranscriptomics, and metabolomics to build on our functional computational pipelines and enable species identification, microbial gene catalogues, metabolic reconstructions, and mechanisms and networks of susceptibility to preterm birth. In addition, we describe our concomitant efforts to build a community resource for future large-scale studies on host and microbe biomarkers acquired in this set of preterm, near term, and term births. By utilizing our state-of-the-science technology and analysis tools in a longitudinal case-cohort of preterm birth subjects, we will be able to transform "discovery based" metagenomics and multi'omics science into readily translatable mechanistic studies at a previously unparalleled level. Our proven abilit to execute such clinical studies and utilize high-throughput technologies makes such large-scale "team science" feasible. Because preterm birth is prevalent in both the developed and developing world, these studies are of broad significance to our population's disease burden and will lead to potential innovative interventions.
This application from a leading team of microbiome physician and nurse scientists at Baylor College of Medicine and UTMB aims to test the hypothesis that robust characterization of the microbiome in pregnancy will reveal previously unrecognized mechanisms and markers of preterm birth. By utilizing our state-of-the- science technology and analysis tools, we are able to transform discovery based metagenomics and multi'omics science into mechanistic studies at a previously unparalleled level to better understand potential microbial and inflammatory causes of preterm birth. Our proven ability to conduct cutting-edge human microbiome research makes such large-scale studies feasible. Our commitment and experience in promoting advances in the health of pregnant women and their children will enable our findings to be readily translatable for the common good.
|Kahr, Maike K; Suter, Melissa A; Ballas, Jerasimos et al. (2016) Geospatial analysis of food environment demonstrates associations with gestational diabetes. Am J Obstet Gynecol 214:110.e1-9|
|Greenhalgh, Kacy; Meyer, Kristen M; Aagaard, Kjersti M et al. (2016) The human gut microbiome in health: establishment and resilience of microbiota over a lifetime. Environ Microbiol 18:2103-16|
|Chu, Derrick M; Antony, Kathleen M; Ma, Jun et al. (2016) The early infant gut microbiome varies in association with a maternal high-fat diet. Genome Med 8:77|
|Gonzalez-Rodriguez, Pablo; Cantu, Jessica; O'Neil, Derek et al. (2016) Alterations in expression of imprinted genes from the H19/IGF2 loci in a multigenerational model of intrauterine growth restriction (IUGR). Am J Obstet Gynecol 214:625.e1-625.e11|
|Kahr, Maike K; Suter, Melissa A; Ballas, Jerasimos et al. (2016) Preterm birth and its associations with residence and ambient vehicular traffic exposure. Am J Obstet Gynecol 215:111.e1-111.e10|
|Chu, Derrick M; Aagaard, Kjersti M (2016) Microbiome: Eating for trillions. Nature 532:316-7|
|Racusin, Diana A; Antony, Kathleen M; Haase, Jennifer et al. (2016) Mode of Delivery in Premature Neonates: Does It Matter? AJP Rep 6:e251-9|
|Prince, Amanda L; Ma, Jun; Kannan, Paranthaman S et al. (2016) The placental membrane microbiome is altered among subjects with spontaneous preterm birth with and without chorioamnionitis. Am J Obstet Gynecol 214:627.e1-627.e16|
|Prince, Amanda L; Chu, Derrick M; Seferovic, Maxim D et al. (2015) The perinatal microbiome and pregnancy: moving beyond the vaginal microbiome. Cold Spring Harb Perspect Med 5:|
|Seferovic, Maxim D; Goodspeed, Danielle M; Chu, Derrick M et al. (2015) Heritable IUGR and adult metabolic syndrome are reversible and associated with alterations in the metabolome following dietary supplementation of 1-carbon intermediates. FASEB J 29:2640-52|
Showing the most recent 10 out of 17 publications