We propose to identify functional interactions between Ago-miRNA and neuron-specific RNA binding proteins (nRNABPs) in the normal and stressed mouse brain. RNA regulation in vivo involves the superimposed and likely combinatorial action of many RNABPs, but most investigations of RNABPs have focused on the role of individual proteins in vitro. This has confined our understanding of """"""""conventional"""""""" regulation by RNABPs and how they intersect with Argonaute (Ago) mediated miRNA regulation;while it is suspected that these two systems intersect, there is almost no understanding of where they do so or what the functional consequences are. The expanding list of RNABPs and miRNAs associated with neurologic disease has underscored large gaps in our understanding of their roles in disease pathogenesis. We developed HITS-CLIP during the last funding period, a revolutionary approach to the study of protein-RNA regulation, and will apply it for the first time to studying coordinate and dynamic regulation by Ago-miRNA and neuronal RNABPs. These studies will be applied to normal brain, using homologous recombination in mice to establish robust and relevant in vivo study in neurons. They will then be applied to stress brain, using three brain-disease relevant paradigms.
Dysregulation of RNA-the key molecule between genomic DNA and proteins-is increasingly recognized to lie at the root of human neurologic disease. Precisely what role RNA and its control plays is addressed here by looking at small microRNAs in the brain and how they are controlled by neuron-specific RNA binding proteins. These controls will then be studied in newly constructed mouse models of human disease, allowing generation of biologic insight and identification of new targets for diagnostic and therapeutic development.
|Scheckel, Claudia; Drapeau, Elodie; Frias, Maria A et al. (2016) Regulatory consequences of neuronal ELAV-like protein binding to coding and non-coding RNAs in human brain. Elife 5:|
|Hwang, Hun-Way; Park, Christopher Y; Goodarzi, Hani et al. (2016) PAPERCLIP Identifies MicroRNA Targets and a Role of CstF64/64tau in Promoting Non-canonical poly(A) Site Usage. Cell Rep 15:423-35|
|Leggere, Janelle C; Saito, Yuhki; Darnell, Robert B et al. (2016) NOVA regulates Dcc alternative splicing during neuronal migration and axon guidance in the spinal cord. Elife 5:|
|Saito, Yuhki; Miranda-Rottmann, Soledad; Ruggiu, Matteo et al. (2016) NOVA2-mediated RNA regulation is required for axonal pathfinding during development. Elife 5:|
|Scheel, Troels K H; Luna, Joseph M; Liniger, Matthias et al. (2016) A Broad RNA Virus Survey Reveals Both miRNA Dependence and Functional Sequestration. Cell Host Microbe 19:409-23|
|Luna, Joseph M; Scheel, Troels K H; Danino, Tal et al. (2015) Hepatitis C virus RNA functionally sequesters miR-122. Cell 160:1099-110|
|Scheckel, Claudia; Darnell, Robert B (2015) Microexons--tiny but mighty. EMBO J 34:273-4|
|Ke, Shengdong; Alemu, Endalkachew A; Mertens, Claudia et al. (2015) A majority of m6A residues are in the last exons, allowing the potential for 3' UTR regulation. Genes Dev 29:2037-53|
|Moore, Michael J; Scheel, Troels K H; Luna, Joseph M et al. (2015) miRNA-target chimeras reveal miRNA 3'-end pairing as a major determinant of Argonaute target specificity. Nat Commun 6:8864|
|Korb, Erica; Herre, Margo; Zucker-Scharff, Ilana et al. (2015) BET protein Brd4 activates transcription in neurons and BET inhibitor Jq1 blocks memory in mice. Nat Neurosci 18:1464-73|
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