Age-related macular degeneration (AMD) is a common debilitating disease whose public health impact has been increasing due to population aging. Our group has received NEI funding to ascertain a large data set of AMD patients, their affected and unaffected relatives and a group of unrelated control individuals with confirmed absence of AMD for studying the genetic epidemiology of this disorder. Our data set includes extensive information about environmental risk factors for AMD. Our hypothesis is that the incorporation of environmental covariates and detailed phenotypic features can enhance the gene mapping process. Methodological work not funded by the parent grant is needed to investigate statistical approaches for accomplishing this goal.
Specific Aims : (1) Evaluate different approaches for incorporating phenotypic features of AMD into genetic linkage analysis. (2) Evaluate whether sophisticated epidemiologic risk-prediction models for environmental covariates, such as smoking history, can benefit our gene identification efforts. (3) Extend a conditional logistic regression model for candidate gene analysis to jointly analyze related cases, sibling and population controls, and examine its ability to estimate gene-environment (GxE) interaction. Methods: We will perform several simulation studies to 1) investigate the statistical power for detection of linkage signals when disease severity measures are analyzed as a covariate in affected sibling-pair (ASP) linkage analysis and as a quantitative trait in a Haseman-Elston regression model, 2) compare the statistical power of different techniques for incorporating information gained from epidemiologic modeling into ASP linkage analysis, and 3) evaluate the statistical power of the conditional logistic regression model and its extension to detect GxE interaction. We will apply these methods to our ongoing follow-up study of linkage signals obtained in an initial genome screen, to further analysis of our most promising AMD candidate gene, the apolipoprotein E (APOE) gene, and to future candidate gene analyses. Significance: Our long-term goal is to advance our knowledge about the genetic and environmental risk factors for AMD to ultimately aid in the development of better prevention and treatment strategies.

Agency
National Institute of Health (NIH)
Institute
National Eye Institute (NEI)
Type
Small Research Grants (R03)
Project #
1R03EY015216-01
Application #
6712446
Study Section
Special Emphasis Panel (ZEY1-VSN (03))
Program Officer
Chin, Hemin R
Project Start
2004-01-01
Project End
2005-11-30
Budget Start
2004-01-01
Budget End
2004-11-30
Support Year
1
Fiscal Year
2004
Total Cost
$231,000
Indirect Cost
Name
Duke University
Department
Internal Medicine/Medicine
Type
Schools of Medicine
DUNS #
044387793
City
Durham
State
NC
Country
United States
Zip Code
27705
Schmidt, Silke; Schmidt, Michael A; Qin, Xuejun et al. (2008) Increased efficiency of case-control association analysis by using allele-sharing and covariate information. Hum Hered 65:154-65
Chung, Ren-Hua; Schmidt, Silke; Martin, Eden R et al. (2008) Ordered-subset analysis (OSA) for family-based association mapping of complex traits. Genet Epidemiol 32:627-37
Spencer, Kylee L; Hauser, Michael A; Olson, Lana M et al. (2008) Deletion of CFHR3 and CFHR1 genes in age-related macular degeneration. Hum Mol Genet 17:971-7
Scott, William K; Schmidt, Silke; Hauser, Michael A et al. (2007) Independent effects of complement factor H Y402H polymorphism and cigarette smoking on risk of age-related macular degeneration. Ophthalmology 114:1151-6
Dube, Marie-Pierre; Schmidt, Silke; Hauser, Elizabeth et al. (2007) Multistage designs in the genomic era: providing balance in complex disease studies. Genet Epidemiol 31 Suppl 1:S118-23
Spencer, Kylee L; Hauser, Michael A; Olson, Lana M et al. (2007) Protective effect of complement factor B and complement component 2 variants in age-related macular degeneration. Hum Mol Genet 16:1986-92
Schmidt, Silke; Qin, Xuejun; Schmidt, Michael A et al. (2007) Interpreting analyses of continuous covariates in affected sibling pair linkage studies. Genet Epidemiol 31:541-52
Spencer, Kylee L; Hauser, Michael A; Olson, Lana M et al. (2007) Haplotypes spanning the complement factor H gene are protective against age-related macular degeneration. Invest Ophthalmol Vis Sci 48:4277-83
Schmidt, Silke; Hauser, Michael A; Scott, William K et al. (2006) Cigarette smoking strongly modifies the association of LOC387715 and age-related macular degeneration. Am J Hum Genet 78:852-64
Schmidt, Silke; Schmidt, Michael A; Qin, Xuejun et al. (2006) Linkage analysis with gene-environment interaction: model illustration and performance of ordered subset analysis. Genet Epidemiol 30:409-22

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